miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 3' -56.7 NC_004812.1 + 1424 0.67 0.859664
Target:  5'- gGCGGCCGCGGgGaGG-GGCCGg--GGc -3'
miRNA:   3'- -UGUUGGUGUCgCaCCaCCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 4051 0.68 0.793035
Target:  5'- gGCGGCCGCGGCGUcGUcGUCGUCg-- -3'
miRNA:   3'- -UGUUGGUGUCGCAcCAcCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 10960 0.66 0.881514
Target:  5'- uCAuCCGC-GCGgaaggugagaGGUGGCCGUgCUGGc -3'
miRNA:   3'- uGUuGGUGuCGCa---------CCACCGGCA-GACC- -5'
21480 3' -56.7 NC_004812.1 + 11308 0.68 0.819308
Target:  5'- cGCGgggcGCCGCGGgGcGGgGGCCGgugggCUGGg -3'
miRNA:   3'- -UGU----UGGUGUCgCaCCaCCGGCa----GACC- -5'
21480 3' -56.7 NC_004812.1 + 11517 0.7 0.717354
Target:  5'- -aAGCC-CAGCGUGG-GGCUcagCUGGa -3'
miRNA:   3'- ugUUGGuGUCGCACCaCCGGca-GACC- -5'
21480 3' -56.7 NC_004812.1 + 13417 0.72 0.596584
Target:  5'- gACGGCCGgAG-G-GGUGGCCGUCguuucgGGg -3'
miRNA:   3'- -UGUUGGUgUCgCaCCACCGGCAGa-----CC- -5'
21480 3' -56.7 NC_004812.1 + 19703 0.69 0.765482
Target:  5'- gGCGGCgCGCGGCGccGGcgaccGGCCGUCgGGc -3'
miRNA:   3'- -UGUUG-GUGUCGCa-CCa----CCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 22731 0.66 0.893035
Target:  5'- gGCGACgagcccgucucgcgCGCGGCGUGGUGGaccuggugCGUCcaggUGGg -3'
miRNA:   3'- -UGUUG--------------GUGUCGCACCACCg-------GCAG----ACC- -5'
21480 3' -56.7 NC_004812.1 + 26029 0.67 0.85197
Target:  5'- gACGGCgACGGCG-GGgccggGGCCGg--GGg -3'
miRNA:   3'- -UGUUGgUGUCGCaCCa----CCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 27361 0.67 0.85197
Target:  5'- cGCGGCC-CAGCcaGGUGGCCGa---- -3'
miRNA:   3'- -UGUUGGuGUCGcaCCACCGGCagacc -5'
21480 3' -56.7 NC_004812.1 + 28076 0.68 0.783982
Target:  5'- gGCAACCGCcucuGCG-GGcccgacacGGCCGcCUGGg -3'
miRNA:   3'- -UGUUGGUGu---CGCaCCa-------CCGGCaGACC- -5'
21480 3' -56.7 NC_004812.1 + 35600 0.66 0.881514
Target:  5'- gGCGACCGCcgaGGCGUGcGccgGGCCGaacgCgGGg -3'
miRNA:   3'- -UGUUGGUG---UCGCAC-Ca--CCGGCa---GaCC- -5'
21480 3' -56.7 NC_004812.1 + 35936 0.69 0.731058
Target:  5'- gGCGGCCGCuugaacugcacgucGC-UGGUGGCCGUCg-- -3'
miRNA:   3'- -UGUUGGUGu-------------CGcACCACCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 37195 0.67 0.827743
Target:  5'- uGCAGCgucaGCAGCGcGG-GGCCGUCc-- -3'
miRNA:   3'- -UGUUGg---UGUCGCaCCaCCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 41725 0.7 0.67751
Target:  5'- cCAGCCcCGGCGUGGUGGUgaCGg--GGg -3'
miRNA:   3'- uGUUGGuGUCGCACCACCG--GCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 46822 0.67 0.859664
Target:  5'- gGCGGCCGuCGGCccGGUcgagggGGCCGUCacgGGg -3'
miRNA:   3'- -UGUUGGU-GUCGcaCCA------CCGGCAGa--CC- -5'
21480 3' -56.7 NC_004812.1 + 46917 0.7 0.667437
Target:  5'- cGCGGCgGCGGUgGUGGUcuuccccaGGCCGUgUGGc -3'
miRNA:   3'- -UGUUGgUGUCG-CACCA--------CCGGCAgACC- -5'
21480 3' -56.7 NC_004812.1 + 48125 0.67 0.827743
Target:  5'- gACGGCggaGgAGCG-GGUGGCCGUCc-- -3'
miRNA:   3'- -UGUUGg--UgUCGCaCCACCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 48293 0.71 0.647213
Target:  5'- gACGGCCGCGGC--GGUGGCCGa--GGa -3'
miRNA:   3'- -UGUUGGUGUCGcaCCACCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 56178 0.76 0.350385
Target:  5'- uACAGCCcgGGCGUGGUGGCCuggaagacGUCgUGGg -3'
miRNA:   3'- -UGUUGGugUCGCACCACCGG--------CAG-ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.