miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 3' -56.7 NC_004812.1 + 86612 0.66 0.892375
Target:  5'- -gGGCCGCGGCGcgguugcccagcgGGUGGUCGUg-GGu -3'
miRNA:   3'- ugUUGGUGUCGCa------------CCACCGGCAgaCC- -5'
21480 3' -56.7 NC_004812.1 + 90000 0.68 0.774794
Target:  5'- gACGGCCugGGCGUGGagcGGCCcgcgGGc -3'
miRNA:   3'- -UGUUGGugUCGCACCa--CCGGcagaCC- -5'
21480 3' -56.7 NC_004812.1 + 98410 0.67 0.836003
Target:  5'- gGCGgcGCCGCAGCGUcucGGUgcggcGGCCG-CgGGg -3'
miRNA:   3'- -UGU--UGGUGUCGCA---CCA-----CCGGCaGaCC- -5'
21480 3' -56.7 NC_004812.1 + 99236 0.67 0.867157
Target:  5'- uCGGCgGgGGCG-GG-GGCCGUCcGGg -3'
miRNA:   3'- uGUUGgUgUCGCaCCaCCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 99397 0.66 0.888369
Target:  5'- gGC-GCUGCGGCGgcUGG-GGUCGUCgGGg -3'
miRNA:   3'- -UGuUGGUGUCGC--ACCaCCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 101170 0.68 0.819308
Target:  5'- gACGGCCGCGGCG-GGgacGGUCGU--GGa -3'
miRNA:   3'- -UGUUGGUGUCGCaCCa--CCGGCAgaCC- -5'
21480 3' -56.7 NC_004812.1 + 102005 0.67 0.867157
Target:  5'- cGCGACuCGCGGCGccgccgcgagGGUGGCuCGUCc-- -3'
miRNA:   3'- -UGUUG-GUGUCGCa---------CCACCG-GCAGacc -5'
21480 3' -56.7 NC_004812.1 + 102926 0.66 0.880816
Target:  5'- gGCGGCCGCGaacgagagccGCGggGGUGGCgggggggCGUCgGGg -3'
miRNA:   3'- -UGUUGGUGU----------CGCa-CCACCG-------GCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 103767 0.67 0.867157
Target:  5'- -gGGCCGCggucgGGCGU-GUGGCCGUCc-- -3'
miRNA:   3'- ugUUGGUG-----UCGCAcCACCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 104704 0.67 0.827743
Target:  5'- cGCcGCCAUgcgGGCGUGcGUGGCCGcCa-- -3'
miRNA:   3'- -UGuUGGUG---UCGCAC-CACCGGCaGacc -5'
21480 3' -56.7 NC_004812.1 + 104868 0.67 0.859664
Target:  5'- gGCGGCCGCGGCGgucgucGUcGCCGUCg-- -3'
miRNA:   3'- -UGUUGGUGUCGCac----CAcCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 106154 0.68 0.819308
Target:  5'- aGCGGCU-CGGCGUccGGcugGGCCGUCgGGc -3'
miRNA:   3'- -UGUUGGuGUCGCA--CCa--CCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 106438 0.72 0.556493
Target:  5'- -aGAUCGCGGCGcUGGcGGCCGUCUc- -3'
miRNA:   3'- ugUUGGUGUCGC-ACCaCCGGCAGAcc -5'
21480 3' -56.7 NC_004812.1 + 107186 0.66 0.90141
Target:  5'- gGCGAgCGgAGCGUGGcGGUCGggcgGGg -3'
miRNA:   3'- -UGUUgGUgUCGCACCaCCGGCaga-CC- -5'
21480 3' -56.7 NC_004812.1 + 107207 0.72 0.57646
Target:  5'- -gGGCCACGGCGcg--GGCCGcCUGGg -3'
miRNA:   3'- ugUUGGUGUCGCaccaCCGGCaGACC- -5'
21480 3' -56.7 NC_004812.1 + 109142 0.66 0.881514
Target:  5'- cCGGCgGCGGCGacGGaccGGCCGUCgGGc -3'
miRNA:   3'- uGUUGgUGUCGCa-CCa--CCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 109705 0.71 0.647213
Target:  5'- cACcGCCGCcGCGcUGGcGGCCGcgCUGGg -3'
miRNA:   3'- -UGuUGGUGuCGC-ACCaCCGGCa-GACC- -5'
21480 3' -56.7 NC_004812.1 + 110910 0.66 0.895002
Target:  5'- gACAACCgggcccugcuGCAGC-UGGU-GCCGUCccgGGg -3'
miRNA:   3'- -UGUUGG----------UGUCGcACCAcCGGCAGa--CC- -5'
21480 3' -56.7 NC_004812.1 + 113009 0.67 0.867157
Target:  5'- ---cCCGCGGCGUGGgcuaucggcUGGCCGgcgUUGa -3'
miRNA:   3'- uguuGGUGUCGCACC---------ACCGGCa--GACc -5'
21480 3' -56.7 NC_004812.1 + 115588 0.66 0.888369
Target:  5'- gGCuuCCGCGGCGggcGGcgGGCUGUaggGGg -3'
miRNA:   3'- -UGuuGGUGUCGCa--CCa-CCGGCAga-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.