miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 3' -56.7 NC_004812.1 + 154029 0.66 0.90141
Target:  5'- gGCGGCgGCGGCGUcGGaggcggGGUCGUCg-- -3'
miRNA:   3'- -UGUUGgUGUCGCA-CCa-----CCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 153585 0.68 0.783982
Target:  5'- gGCAACCGCcucuGCG-GGcccgacacGGCCGcCUGGg -3'
miRNA:   3'- -UGUUGGUGu---CGCaCCa-------CCGGCaGACC- -5'
21480 3' -56.7 NC_004812.1 + 153086 0.75 0.398864
Target:  5'- -gGGCCugGGUcugGUGGgcgGGCUGUCUGGg -3'
miRNA:   3'- ugUUGGugUCG---CACCa--CCGGCAGACC- -5'
21480 3' -56.7 NC_004812.1 + 152766 0.71 0.606687
Target:  5'- gGCGACCACGGCGcagaGG-GGCgGggcCUGGg -3'
miRNA:   3'- -UGUUGGUGUCGCa---CCaCCGgCa--GACC- -5'
21480 3' -56.7 NC_004812.1 + 151538 0.67 0.85197
Target:  5'- gACGGCgACGGCG-GGgccggGGCCGg--GGg -3'
miRNA:   3'- -UGUUGgUGUCGCaCCa----CCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 146846 0.68 0.801947
Target:  5'- cGCGGCCGcCGGCGcgccgcgggccUGGUGGCgGUCcccucccgGGg -3'
miRNA:   3'- -UGUUGGU-GUCGC-----------ACCACCGgCAGa-------CC- -5'
21480 3' -56.7 NC_004812.1 + 144297 0.67 0.859664
Target:  5'- gGCGGCCu--GCG-GGUcgcugaGGCCGUCgUGGg -3'
miRNA:   3'- -UGUUGGuguCGCaCCA------CCGGCAG-ACC- -5'
21480 3' -56.7 NC_004812.1 + 142004 0.68 0.801947
Target:  5'- cCGGCUGCAGUGguuccgGGacgUGGCCGcgCUGGa -3'
miRNA:   3'- uGUUGGUGUCGCa-----CC---ACCGGCa-GACC- -5'
21480 3' -56.7 NC_004812.1 + 141783 0.67 0.859664
Target:  5'- aACGGCCGC-GCGgggGGgcgGGCCGcgCgGGg -3'
miRNA:   3'- -UGUUGGUGuCGCa--CCa--CCGGCa-GaCC- -5'
21480 3' -56.7 NC_004812.1 + 138713 0.66 0.90141
Target:  5'- gACGACCGCGGCGcGGcgGGCCcgc-GGc -3'
miRNA:   3'- -UGUUGGUGUCGCaCCa-CCGGcagaCC- -5'
21480 3' -56.7 NC_004812.1 + 137943 0.67 0.844081
Target:  5'- -aGGCgGCGGgcgcCGUGGacaUGGCCGUCUGcGg -3'
miRNA:   3'- ugUUGgUGUC----GCACC---ACCGGCAGAC-C- -5'
21480 3' -56.7 NC_004812.1 + 137046 0.7 0.67751
Target:  5'- -uGGCC--GGgGUGGUGGCCGgcCUGGg -3'
miRNA:   3'- ugUUGGugUCgCACCACCGGCa-GACC- -5'
21480 3' -56.7 NC_004812.1 + 130731 0.67 0.859664
Target:  5'- -aGGCCgaGCGGCGUcGGccucgcGGCCGUCgGGg -3'
miRNA:   3'- ugUUGG--UGUCGCA-CCa-----CCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 129560 0.68 0.793035
Target:  5'- gGCGGCCGCGGCGUcGUcGUCGUCg-- -3'
miRNA:   3'- -UGUUGGUGUCGCAcCAcCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 126932 0.67 0.859664
Target:  5'- gGCGGCCGCGGgGaGG-GGCCGg--GGc -3'
miRNA:   3'- -UGUUGGUGUCgCaCCaCCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 124720 0.67 0.866417
Target:  5'- uCGACCGCGG-GUGGgaggcgcUGGCCGgg-GGg -3'
miRNA:   3'- uGUUGGUGUCgCACC-------ACCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 123128 0.66 0.90141
Target:  5'- gGCGGCgGCGGCGUcGGaggcggGGUCGUCg-- -3'
miRNA:   3'- -UGUUGgUGUCGCA-CCa-----CCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 122185 0.75 0.398864
Target:  5'- -gGGCCugGGUcugGUGGgcgGGCUGUCUGGg -3'
miRNA:   3'- ugUUGGugUCG---CACCa--CCGGCAGACC- -5'
21480 3' -56.7 NC_004812.1 + 121865 0.71 0.606687
Target:  5'- gGCGACCACGGCGcagaGG-GGCgGggcCUGGg -3'
miRNA:   3'- -UGUUGGUGUCGCa---CCaCCGgCa--GACC- -5'
21480 3' -56.7 NC_004812.1 + 120054 0.71 0.647213
Target:  5'- -gGACCugGGCGUGGgguacacGGCCGcCgUGGc -3'
miRNA:   3'- ugUUGGugUCGCACCa------CCGGCaG-ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.