Results 21 - 40 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21480 | 3' | -56.7 | NC_004812.1 | + | 118088 | 0.66 | 0.888369 |
Target: 5'- -gGACCACcGCGUGcuccGGCUGUCccUGGa -3' miRNA: 3'- ugUUGGUGuCGCACca--CCGGCAG--ACC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 117383 | 0.7 | 0.67751 |
Target: 5'- -uGGCCACGcGCGUGGcccgGGCCacgCUGGu -3' miRNA: 3'- ugUUGGUGU-CGCACCa---CCGGca-GACC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 115588 | 0.66 | 0.888369 |
Target: 5'- gGCuuCCGCGGCGggcGGcgGGCUGUaggGGg -3' miRNA: 3'- -UGuuGGUGUCGCa--CCa-CCGGCAga-CC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 113009 | 0.67 | 0.867157 |
Target: 5'- ---cCCGCGGCGUGGgcuaucggcUGGCCGgcgUUGa -3' miRNA: 3'- uguuGGUGUCGCACC---------ACCGGCa--GACc -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 110910 | 0.66 | 0.895002 |
Target: 5'- gACAACCgggcccugcuGCAGC-UGGU-GCCGUCccgGGg -3' miRNA: 3'- -UGUUGG----------UGUCGcACCAcCGGCAGa--CC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 109705 | 0.71 | 0.647213 |
Target: 5'- cACcGCCGCcGCGcUGGcGGCCGcgCUGGg -3' miRNA: 3'- -UGuUGGUGuCGC-ACCaCCGGCa-GACC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 109142 | 0.66 | 0.881514 |
Target: 5'- cCGGCgGCGGCGacGGaccGGCCGUCgGGc -3' miRNA: 3'- uGUUGgUGUCGCa-CCa--CCGGCAGaCC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 107207 | 0.72 | 0.57646 |
Target: 5'- -gGGCCACGGCGcg--GGCCGcCUGGg -3' miRNA: 3'- ugUUGGUGUCGCaccaCCGGCaGACC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 107186 | 0.66 | 0.90141 |
Target: 5'- gGCGAgCGgAGCGUGGcGGUCGggcgGGg -3' miRNA: 3'- -UGUUgGUgUCGCACCaCCGGCaga-CC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 106438 | 0.72 | 0.556493 |
Target: 5'- -aGAUCGCGGCGcUGGcGGCCGUCUc- -3' miRNA: 3'- ugUUGGUGUCGC-ACCaCCGGCAGAcc -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 106154 | 0.68 | 0.819308 |
Target: 5'- aGCGGCU-CGGCGUccGGcugGGCCGUCgGGc -3' miRNA: 3'- -UGUUGGuGUCGCA--CCa--CCGGCAGaCC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 104868 | 0.67 | 0.859664 |
Target: 5'- gGCGGCCGCGGCGgucgucGUcGCCGUCg-- -3' miRNA: 3'- -UGUUGGUGUCGCac----CAcCGGCAGacc -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 104704 | 0.67 | 0.827743 |
Target: 5'- cGCcGCCAUgcgGGCGUGcGUGGCCGcCa-- -3' miRNA: 3'- -UGuUGGUG---UCGCAC-CACCGGCaGacc -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 103767 | 0.67 | 0.867157 |
Target: 5'- -gGGCCGCggucgGGCGU-GUGGCCGUCc-- -3' miRNA: 3'- ugUUGGUG-----UCGCAcCACCGGCAGacc -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 102926 | 0.66 | 0.880816 |
Target: 5'- gGCGGCCGCGaacgagagccGCGggGGUGGCgggggggCGUCgGGg -3' miRNA: 3'- -UGUUGGUGU----------CGCa-CCACCG-------GCAGaCC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 102005 | 0.67 | 0.867157 |
Target: 5'- cGCGACuCGCGGCGccgccgcgagGGUGGCuCGUCc-- -3' miRNA: 3'- -UGUUG-GUGUCGCa---------CCACCG-GCAGacc -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 101170 | 0.68 | 0.819308 |
Target: 5'- gACGGCCGCGGCG-GGgacGGUCGU--GGa -3' miRNA: 3'- -UGUUGGUGUCGCaCCa--CCGGCAgaCC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 99397 | 0.66 | 0.888369 |
Target: 5'- gGC-GCUGCGGCGgcUGG-GGUCGUCgGGg -3' miRNA: 3'- -UGuUGGUGUCGC--ACCaCCGGCAGaCC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 99236 | 0.67 | 0.867157 |
Target: 5'- uCGGCgGgGGCG-GG-GGCCGUCcGGg -3' miRNA: 3'- uGUUGgUgUCGCaCCaCCGGCAGaCC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 98410 | 0.67 | 0.836003 |
Target: 5'- gGCGgcGCCGCAGCGUcucGGUgcggcGGCCG-CgGGg -3' miRNA: 3'- -UGU--UGGUGUCGCA---CCA-----CCGGCaGaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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