miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 3' -56.7 NC_004812.1 + 90000 0.68 0.774794
Target:  5'- gACGGCCugGGCGUGGagcGGCCcgcgGGc -3'
miRNA:   3'- -UGUUGGugUCGCACCa--CCGGcagaCC- -5'
21480 3' -56.7 NC_004812.1 + 86612 0.66 0.892375
Target:  5'- -gGGCCGCGGCGcgguugcccagcgGGUGGUCGUg-GGu -3'
miRNA:   3'- ugUUGGUGUCGCa------------CCACCGGCAgaCC- -5'
21480 3' -56.7 NC_004812.1 + 85602 0.73 0.497992
Target:  5'- cCGGCCccGCGGCGgcgagcgGGCCGUCUGGa -3'
miRNA:   3'- uGUUGG--UGUCGCacca---CCGGCAGACC- -5'
21480 3' -56.7 NC_004812.1 + 81245 0.66 0.895002
Target:  5'- cGCGugCACcucGCGgaggacGGUGGCCaucacguugccGUCUGGc -3'
miRNA:   3'- -UGUugGUGu--CGCa-----CCACCGG-----------CAGACC- -5'
21480 3' -56.7 NC_004812.1 + 81096 0.66 0.880816
Target:  5'- -gGGCCcguggcggugcggGCGGCGUGGUGGgCCGUg--- -3'
miRNA:   3'- ugUUGG-------------UGUCGCACCACC-GGCAgacc -5'
21480 3' -56.7 NC_004812.1 + 79615 0.68 0.774794
Target:  5'- cACGGCCGCGGUGagGGcGGCCGUg--- -3'
miRNA:   3'- -UGUUGGUGUCGCa-CCaCCGGCAgacc -5'
21480 3' -56.7 NC_004812.1 + 76744 0.67 0.867157
Target:  5'- cGCGGCCGCcGUGUc--GGCCGUCgGGu -3'
miRNA:   3'- -UGUUGGUGuCGCAccaCCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 76304 0.67 0.85197
Target:  5'- aGCAG-CGCGGCGcGGUcGCCGUCcgccUGGg -3'
miRNA:   3'- -UGUUgGUGUCGCaCCAcCGGCAG----ACC- -5'
21480 3' -56.7 NC_004812.1 + 75822 0.68 0.774794
Target:  5'- aGCGGCgGCAGCGccgGGUGGUgcugGUCUcGGg -3'
miRNA:   3'- -UGUUGgUGUCGCa--CCACCGg---CAGA-CC- -5'
21480 3' -56.7 NC_004812.1 + 74852 0.67 0.844081
Target:  5'- cGCGGCCucCAGCGagcgccgcagGGcGGCCGUCcGGc -3'
miRNA:   3'- -UGUUGGu-GUCGCa---------CCaCCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 74718 0.68 0.810707
Target:  5'- -gAGCCcCAGCaccguguUGGUcGCCGUCUGGa -3'
miRNA:   3'- ugUUGGuGUCGc------ACCAcCGGCAGACC- -5'
21480 3' -56.7 NC_004812.1 + 73319 0.67 0.836003
Target:  5'- cACGACCACAGCGcGGccaGcGCCGcgCUcGGa -3'
miRNA:   3'- -UGUUGGUGUCGCaCCa--C-CGGCa-GA-CC- -5'
21480 3' -56.7 NC_004812.1 + 71957 1.09 0.002632
Target:  5'- aACAACCACAGCGUGGUGGCCGUCUGGc -3'
miRNA:   3'- -UGUUGGUGUCGCACCACCGGCAGACC- -5'
21480 3' -56.7 NC_004812.1 + 69871 0.66 0.888369
Target:  5'- uCGGCC-CGGCGcUGGUcGCCGUCg-- -3'
miRNA:   3'- uGUUGGuGUCGC-ACCAcCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 68913 0.66 0.895002
Target:  5'- uGCcGCCGCuGCGggccaggaUGG-GGCCGacguUCUGGg -3'
miRNA:   3'- -UGuUGGUGuCGC--------ACCaCCGGC----AGACC- -5'
21480 3' -56.7 NC_004812.1 + 68125 0.66 0.90141
Target:  5'- gGCGGCCGCGGCGacgaagGGCCcgguGUCgGGg -3'
miRNA:   3'- -UGUUGGUGUCGCacca--CCGG----CAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 67701 0.68 0.801947
Target:  5'- cCGAgCAgGGCGcgGGUGGCgGaCUGGg -3'
miRNA:   3'- uGUUgGUgUCGCa-CCACCGgCaGACC- -5'
21480 3' -56.7 NC_004812.1 + 59710 0.69 0.756053
Target:  5'- gGCGGCgaGCGGCGaggcGGgcccccgGGUCGUCUGGg -3'
miRNA:   3'- -UGUUGg-UGUCGCa---CCa------CCGGCAGACC- -5'
21480 3' -56.7 NC_004812.1 + 59242 0.67 0.858904
Target:  5'- cGCGACCGCGGCGagcugcuUGGcGGCgGUgCgcgGGa -3'
miRNA:   3'- -UGUUGGUGUCGC-------ACCaCCGgCA-Ga--CC- -5'
21480 3' -56.7 NC_004812.1 + 59229 0.69 0.736882
Target:  5'- aGCGA-CAUGGCGUGGUuggccuccgugaGGCCGUCgcGGa -3'
miRNA:   3'- -UGUUgGUGUCGCACCA------------CCGGCAGa-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.