miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 3' -56.7 NC_004812.1 + 58668 0.67 0.827743
Target:  5'- -gAACCACuGCG-GGUugGGCUGgCUGGa -3'
miRNA:   3'- ugUUGGUGuCGCaCCA--CCGGCaGACC- -5'
21480 3' -56.7 NC_004812.1 + 79615 0.68 0.774794
Target:  5'- cACGGCCGCGGUGagGGcGGCCGUg--- -3'
miRNA:   3'- -UGUUGGUGUCGCa-CCaCCGGCAgacc -5'
21480 3' -56.7 NC_004812.1 + 153585 0.68 0.783982
Target:  5'- gGCAACCGCcucuGCG-GGcccgacacGGCCGcCUGGg -3'
miRNA:   3'- -UGUUGGUGu---CGCaCCa-------CCGGCaGACC- -5'
21480 3' -56.7 NC_004812.1 + 129560 0.68 0.793035
Target:  5'- gGCGGCCGCGGCGUcGUcGUCGUCg-- -3'
miRNA:   3'- -UGUUGGUGUCGCAcCAcCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 67701 0.68 0.801947
Target:  5'- cCGAgCAgGGCGcgGGUGGCgGaCUGGg -3'
miRNA:   3'- uGUUgGUgUCGCa-CCACCGgCaGACC- -5'
21480 3' -56.7 NC_004812.1 + 74718 0.68 0.810707
Target:  5'- -gAGCCcCAGCaccguguUGGUcGCCGUCUGGa -3'
miRNA:   3'- ugUUGGuGUCGc------ACCAcCGGCAGACC- -5'
21480 3' -56.7 NC_004812.1 + 106154 0.68 0.819308
Target:  5'- aGCGGCU-CGGCGUccGGcugGGCCGUCgGGc -3'
miRNA:   3'- -UGUUGGuGUCGCA--CCa--CCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 37195 0.67 0.827743
Target:  5'- uGCAGCgucaGCAGCGcGG-GGCCGUCc-- -3'
miRNA:   3'- -UGUUGg---UGUCGCaCCaCCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 48125 0.67 0.827743
Target:  5'- gACGGCggaGgAGCG-GGUGGCCGUCc-- -3'
miRNA:   3'- -UGUUGg--UgUCGCaCCACCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 75822 0.68 0.774794
Target:  5'- aGCGGCgGCAGCGccgGGUGGUgcugGUCUcGGg -3'
miRNA:   3'- -UGUUGgUGUCGCa--CCACCGg---CAGA-CC- -5'
21480 3' -56.7 NC_004812.1 + 19703 0.69 0.765482
Target:  5'- gGCGGCgCGCGGCGccGGcgaccGGCCGUCgGGc -3'
miRNA:   3'- -UGUUG-GUGUCGCa-CCa----CCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 59229 0.69 0.736882
Target:  5'- aGCGA-CAUGGCGUGGUuggccuccgugaGGCCGUCgcGGa -3'
miRNA:   3'- -UGUUgGUGUCGCACCA------------CCGGCAGa-CC- -5'
21480 3' -56.7 NC_004812.1 + 122185 0.75 0.398864
Target:  5'- -gGGCCugGGUcugGUGGgcgGGCUGUCUGGg -3'
miRNA:   3'- ugUUGGugUCG---CACCa--CCGGCAGACC- -5'
21480 3' -56.7 NC_004812.1 + 121865 0.71 0.606687
Target:  5'- gGCGACCACGGCGcagaGG-GGCgGggcCUGGg -3'
miRNA:   3'- -UGUUGGUGUCGCa---CCaCCGgCa--GACC- -5'
21480 3' -56.7 NC_004812.1 + 48293 0.71 0.647213
Target:  5'- gACGGCCGCGGC--GGUGGCCGa--GGa -3'
miRNA:   3'- -UGUUGGUGUCGcaCCACCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 46917 0.7 0.667437
Target:  5'- cGCGGCgGCGGUgGUGGUcuuccccaGGCCGUgUGGc -3'
miRNA:   3'- -UGUUGgUGUCG-CACCA--------CCGGCAgACC- -5'
21480 3' -56.7 NC_004812.1 + 137046 0.7 0.67751
Target:  5'- -uGGCC--GGgGUGGUGGCCGgcCUGGg -3'
miRNA:   3'- ugUUGGugUCgCACCACCGGCa-GACC- -5'
21480 3' -56.7 NC_004812.1 + 41725 0.7 0.67751
Target:  5'- cCAGCCcCGGCGUGGUGGUgaCGg--GGg -3'
miRNA:   3'- uGUUGGuGUCGCACCACCG--GCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 11517 0.7 0.717354
Target:  5'- -aAGCC-CAGCGUGG-GGCUcagCUGGa -3'
miRNA:   3'- ugUUGGuGUCGCACCaCCGGca-GACC- -5'
21480 3' -56.7 NC_004812.1 + 35936 0.69 0.731058
Target:  5'- gGCGGCCGCuugaacugcacgucGC-UGGUGGCCGUCg-- -3'
miRNA:   3'- -UGUUGGUGu-------------CGcACCACCGGCAGacc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.