miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 3' -56.7 NC_004812.1 + 73319 0.67 0.836003
Target:  5'- cACGACCACAGCGcGGccaGcGCCGcgCUcGGa -3'
miRNA:   3'- -UGUUGGUGUCGCaCCa--C-CGGCa-GA-CC- -5'
21480 3' -56.7 NC_004812.1 + 104704 0.67 0.827743
Target:  5'- cGCcGCCAUgcgGGCGUGcGUGGCCGcCa-- -3'
miRNA:   3'- -UGuUGGUG---UCGCAC-CACCGGCaGacc -5'
21480 3' -56.7 NC_004812.1 + 58668 0.67 0.827743
Target:  5'- -gAACCACuGCG-GGUugGGCUGgCUGGa -3'
miRNA:   3'- ugUUGGUGuCGCaCCA--CCGGCaGACC- -5'
21480 3' -56.7 NC_004812.1 + 48125 0.67 0.827743
Target:  5'- gACGGCggaGgAGCG-GGUGGCCGUCc-- -3'
miRNA:   3'- -UGUUGg--UgUCGCaCCACCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 37195 0.67 0.827743
Target:  5'- uGCAGCgucaGCAGCGcGG-GGCCGUCc-- -3'
miRNA:   3'- -UGUUGg---UGUCGCaCCaCCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 106154 0.68 0.819308
Target:  5'- aGCGGCU-CGGCGUccGGcugGGCCGUCgGGc -3'
miRNA:   3'- -UGUUGGuGUCGCA--CCa--CCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 74718 0.68 0.810707
Target:  5'- -gAGCCcCAGCaccguguUGGUcGCCGUCUGGa -3'
miRNA:   3'- ugUUGGuGUCGc------ACCAcCGGCAGACC- -5'
21480 3' -56.7 NC_004812.1 + 67701 0.68 0.801947
Target:  5'- cCGAgCAgGGCGcgGGUGGCgGaCUGGg -3'
miRNA:   3'- uGUUgGUgUCGCa-CCACCGgCaGACC- -5'
21480 3' -56.7 NC_004812.1 + 129560 0.68 0.793035
Target:  5'- gGCGGCCGCGGCGUcGUcGUCGUCg-- -3'
miRNA:   3'- -UGUUGGUGUCGCAcCAcCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 153585 0.68 0.783982
Target:  5'- gGCAACCGCcucuGCG-GGcccgacacGGCCGcCUGGg -3'
miRNA:   3'- -UGUUGGUGu---CGCaCCa-------CCGGCaGACC- -5'
21480 3' -56.7 NC_004812.1 + 152766 0.71 0.606687
Target:  5'- gGCGACCACGGCGcagaGG-GGCgGggcCUGGg -3'
miRNA:   3'- -UGUUGGUGUCGCa---CCaCCGgCa--GACC- -5'
21480 3' -56.7 NC_004812.1 + 109705 0.71 0.647213
Target:  5'- cACcGCCGCcGCGcUGGcGGCCGcgCUGGg -3'
miRNA:   3'- -UGuUGGUGuCGC-ACCaCCGGCa-GACC- -5'
21480 3' -56.7 NC_004812.1 + 120054 0.71 0.647213
Target:  5'- -gGACCugGGCGUGGgguacacGGCCGcCgUGGc -3'
miRNA:   3'- ugUUGGugUCGCACCa------CCGGCaG-ACC- -5'
21480 3' -56.7 NC_004812.1 + 117383 0.7 0.67751
Target:  5'- -uGGCCACGcGCGUGGcccgGGCCacgCUGGu -3'
miRNA:   3'- ugUUGGUGU-CGCACCa---CCGGca-GACC- -5'
21480 3' -56.7 NC_004812.1 + 13417 0.72 0.596584
Target:  5'- gACGGCCGgAG-G-GGUGGCCGUCguuucgGGg -3'
miRNA:   3'- -UGUUGGUgUCgCaCCACCGGCAGa-----CC- -5'
21480 3' -56.7 NC_004812.1 + 107207 0.72 0.57646
Target:  5'- -gGGCCACGGCGcg--GGCCGcCUGGg -3'
miRNA:   3'- ugUUGGUGUCGCaccaCCGGCaGACC- -5'
21480 3' -56.7 NC_004812.1 + 106438 0.72 0.556493
Target:  5'- -aGAUCGCGGCGcUGGcGGCCGUCUc- -3'
miRNA:   3'- ugUUGGUGUCGC-ACCaCCGGCAGAcc -5'
21480 3' -56.7 NC_004812.1 + 85602 0.73 0.497992
Target:  5'- cCGGCCccGCGGCGgcgagcgGGCCGUCUGGa -3'
miRNA:   3'- uGUUGG--UGUCGCacca---CCGGCAGACC- -5'
21480 3' -56.7 NC_004812.1 + 153086 0.75 0.398864
Target:  5'- -gGGCCugGGUcugGUGGgcgGGCUGUCUGGg -3'
miRNA:   3'- ugUUGGugUCG---CACCa--CCGGCAGACC- -5'
21480 3' -56.7 NC_004812.1 + 154029 0.66 0.90141
Target:  5'- gGCGGCgGCGGCGUcGGaggcggGGUCGUCg-- -3'
miRNA:   3'- -UGUUGgUGUCGCA-CCa-----CCGGCAGacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.