miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 3' -56.7 NC_004812.1 + 137943 0.67 0.844081
Target:  5'- -aGGCgGCGGgcgcCGUGGacaUGGCCGUCUGcGg -3'
miRNA:   3'- ugUUGgUGUC----GCACC---ACCGGCAGAC-C- -5'
21480 3' -56.7 NC_004812.1 + 69871 0.66 0.888369
Target:  5'- uCGGCC-CGGCGcUGGUcGCCGUCg-- -3'
miRNA:   3'- uGUUGGuGUCGC-ACCAcCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 101170 0.68 0.819308
Target:  5'- gACGGCCGCGGCG-GGgacGGUCGU--GGa -3'
miRNA:   3'- -UGUUGGUGUCGCaCCa--CCGGCAgaCC- -5'
21480 3' -56.7 NC_004812.1 + 85602 0.73 0.497992
Target:  5'- cCGGCCccGCGGCGgcgagcgGGCCGUCUGGa -3'
miRNA:   3'- uGUUGG--UGUCGCacca---CCGGCAGACC- -5'
21480 3' -56.7 NC_004812.1 + 10960 0.66 0.881514
Target:  5'- uCAuCCGC-GCGgaaggugagaGGUGGCCGUgCUGGc -3'
miRNA:   3'- uGUuGGUGuCGCa---------CCACCGGCA-GACC- -5'
21480 3' -56.7 NC_004812.1 + 46822 0.67 0.859664
Target:  5'- gGCGGCCGuCGGCccGGUcgagggGGCCGUCacgGGg -3'
miRNA:   3'- -UGUUGGU-GUCGcaCCA------CCGGCAGa--CC- -5'
21480 3' -56.7 NC_004812.1 + 118088 0.66 0.888369
Target:  5'- -gGACCACcGCGUGcuccGGCUGUCccUGGa -3'
miRNA:   3'- ugUUGGUGuCGCACca--CCGGCAG--ACC- -5'
21480 3' -56.7 NC_004812.1 + 154029 0.66 0.90141
Target:  5'- gGCGGCgGCGGCGUcGGaggcggGGUCGUCg-- -3'
miRNA:   3'- -UGUUGgUGUCGCA-CCa-----CCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 153086 0.75 0.398864
Target:  5'- -gGGCCugGGUcugGUGGgcgGGCUGUCUGGg -3'
miRNA:   3'- ugUUGGugUCG---CACCa--CCGGCAGACC- -5'
21480 3' -56.7 NC_004812.1 + 71957 1.09 0.002632
Target:  5'- aACAACCACAGCGUGGUGGCCGUCUGGc -3'
miRNA:   3'- -UGUUGGUGUCGCACCACCGGCAGACC- -5'
21480 3' -56.7 NC_004812.1 + 107207 0.72 0.57646
Target:  5'- -gGGCCACGGCGcg--GGCCGcCUGGg -3'
miRNA:   3'- ugUUGGUGUCGCaccaCCGGCaGACC- -5'
21480 3' -56.7 NC_004812.1 + 106438 0.72 0.556493
Target:  5'- -aGAUCGCGGCGcUGGcGGCCGUCUc- -3'
miRNA:   3'- ugUUGGUGUCGC-ACCaCCGGCAGAcc -5'
21480 3' -56.7 NC_004812.1 + 41725 0.7 0.67751
Target:  5'- cCAGCCcCGGCGUGGUGGUgaCGg--GGg -3'
miRNA:   3'- uGUUGGuGUCGCACCACCG--GCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 126932 0.67 0.859664
Target:  5'- gGCGGCCGCGGgGaGG-GGCCGg--GGc -3'
miRNA:   3'- -UGUUGGUGUCgCaCCaCCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 104868 0.67 0.859664
Target:  5'- gGCGGCCGCGGCGgucgucGUcGCCGUCg-- -3'
miRNA:   3'- -UGUUGGUGUCGCac----CAcCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 151538 0.67 0.85197
Target:  5'- gACGGCgACGGCG-GGgccggGGCCGg--GGg -3'
miRNA:   3'- -UGUUGgUGUCGCaCCa----CCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 76304 0.67 0.85197
Target:  5'- aGCAG-CGCGGCGcGGUcGCCGUCcgccUGGg -3'
miRNA:   3'- -UGUUgGUGUCGCaCCAcCGGCAG----ACC- -5'
21480 3' -56.7 NC_004812.1 + 27361 0.67 0.85197
Target:  5'- cGCGGCC-CAGCcaGGUGGCCGa---- -3'
miRNA:   3'- -UGUUGGuGUCGcaCCACCGGCagacc -5'
21480 3' -56.7 NC_004812.1 + 153585 0.68 0.783982
Target:  5'- gGCAACCGCcucuGCG-GGcccgacacGGCCGcCUGGg -3'
miRNA:   3'- -UGUUGGUGu---CGCaCCa-------CCGGCaGACC- -5'
21480 3' -56.7 NC_004812.1 + 129560 0.68 0.793035
Target:  5'- gGCGGCCGCGGCGUcGUcGUCGUCg-- -3'
miRNA:   3'- -UGUUGGUGUCGCAcCAcCGGCAGacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.