miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 3' -56.7 NC_004812.1 + 130731 0.67 0.859664
Target:  5'- -aGGCCgaGCGGCGUcGGccucgcGGCCGUCgGGg -3'
miRNA:   3'- ugUUGG--UGUCGCA-CCa-----CCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 137046 0.7 0.67751
Target:  5'- -uGGCC--GGgGUGGUGGCCGgcCUGGg -3'
miRNA:   3'- ugUUGGugUCgCACCACCGGCa-GACC- -5'
21480 3' -56.7 NC_004812.1 + 81245 0.66 0.895002
Target:  5'- cGCGugCACcucGCGgaggacGGUGGCCaucacguugccGUCUGGc -3'
miRNA:   3'- -UGUugGUGu--CGCa-----CCACCGG-----------CAGACC- -5'
21480 3' -56.7 NC_004812.1 + 110910 0.66 0.895002
Target:  5'- gACAACCgggcccugcuGCAGC-UGGU-GCCGUCccgGGg -3'
miRNA:   3'- -UGUUGG----------UGUCGcACCAcCGGCAGa--CC- -5'
21480 3' -56.7 NC_004812.1 + 22731 0.66 0.893035
Target:  5'- gGCGACgagcccgucucgcgCGCGGCGUGGUGGaccuggugCGUCcaggUGGg -3'
miRNA:   3'- -UGUUG--------------GUGUCGCACCACCg-------GCAG----ACC- -5'
21480 3' -56.7 NC_004812.1 + 73319 0.67 0.836003
Target:  5'- cACGACCACAGCGcGGccaGcGCCGcgCUcGGa -3'
miRNA:   3'- -UGUUGGUGUCGCaCCa--C-CGGCa-GA-CC- -5'
21480 3' -56.7 NC_004812.1 + 74852 0.67 0.844081
Target:  5'- cGCGGCCucCAGCGagcgccgcagGGcGGCCGUCcGGc -3'
miRNA:   3'- -UGUUGGu-GUCGCa---------CCaCCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 76304 0.67 0.85197
Target:  5'- aGCAG-CGCGGCGcGGUcGCCGUCcgccUGGg -3'
miRNA:   3'- -UGUUgGUGUCGCaCCAcCGGCAG----ACC- -5'
21480 3' -56.7 NC_004812.1 + 151538 0.67 0.85197
Target:  5'- gACGGCgACGGCG-GGgccggGGCCGg--GGg -3'
miRNA:   3'- -UGUUGgUGUCGCaCCa----CCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 104868 0.67 0.859664
Target:  5'- gGCGGCCGCGGCGgucgucGUcGCCGUCg-- -3'
miRNA:   3'- -UGUUGGUGUCGCac----CAcCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 126932 0.67 0.859664
Target:  5'- gGCGGCCGCGGgGaGG-GGCCGg--GGc -3'
miRNA:   3'- -UGUUGGUGUCgCaCCaCCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 58668 0.67 0.827743
Target:  5'- -gAACCACuGCG-GGUugGGCUGgCUGGa -3'
miRNA:   3'- ugUUGGUGuCGCaCCA--CCGGCaGACC- -5'
21480 3' -56.7 NC_004812.1 + 129560 0.68 0.793035
Target:  5'- gGCGGCCGCGGCGUcGUcGUCGUCg-- -3'
miRNA:   3'- -UGUUGGUGUCGCAcCAcCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 153585 0.68 0.783982
Target:  5'- gGCAACCGCcucuGCG-GGcccgacacGGCCGcCUGGg -3'
miRNA:   3'- -UGUUGGUGu---CGCaCCa-------CCGGCaGACC- -5'
21480 3' -56.7 NC_004812.1 + 79615 0.68 0.774794
Target:  5'- cACGGCCGCGGUGagGGcGGCCGUg--- -3'
miRNA:   3'- -UGUUGGUGUCGCa-CCaCCGGCAgacc -5'
21480 3' -56.7 NC_004812.1 + 98410 0.67 0.836003
Target:  5'- gGCGgcGCCGCAGCGUcucGGUgcggcGGCCG-CgGGg -3'
miRNA:   3'- -UGU--UGGUGUCGCA---CCA-----CCGGCaGaCC- -5'
21480 3' -56.7 NC_004812.1 + 75822 0.68 0.774794
Target:  5'- aGCGGCgGCAGCGccgGGUGGUgcugGUCUcGGg -3'
miRNA:   3'- -UGUUGgUGUCGCa--CCACCGg---CAGA-CC- -5'
21480 3' -56.7 NC_004812.1 + 19703 0.69 0.765482
Target:  5'- gGCGGCgCGCGGCGccGGcgaccGGCCGUCgGGc -3'
miRNA:   3'- -UGUUG-GUGUCGCa-CCa----CCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 99397 0.66 0.888369
Target:  5'- gGC-GCUGCGGCGgcUGG-GGUCGUCgGGg -3'
miRNA:   3'- -UGuUGGUGUCGC--ACCaCCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 115588 0.66 0.888369
Target:  5'- gGCuuCCGCGGCGggcGGcgGGCUGUaggGGg -3'
miRNA:   3'- -UGuuGGUGUCGCa--CCa-CCGGCAga-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.