miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 5' -60.2 NC_004812.1 + 96304 0.65 0.768417
Target:  5'- gGCCAGGGcaaggcccccaaGGGGGGGcgcgacggcGGGGCCGg -3'
miRNA:   3'- gCGGUCCCag----------CUCCUCUa--------UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 37422 0.66 0.762919
Target:  5'- -aCCAGGagcaGGGGGGGgcggGGGGCCGa -3'
miRNA:   3'- gcGGUCCcag-CUCCUCUa---UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 121875 0.66 0.762919
Target:  5'- gCGCagaGGGG-CGGGGccugGGGcGGGGCCGc -3'
miRNA:   3'- -GCGg--UCCCaGCUCC----UCUaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 52233 0.66 0.762919
Target:  5'- uCGCCcucGGUgGGGGAGGUGcGGGCgGc -3'
miRNA:   3'- -GCGGuc-CCAgCUCCUCUAU-CCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 152504 0.66 0.762919
Target:  5'- cCGCCGGcGcCGGGGAGGacggccccgccGGGGCCGc -3'
miRNA:   3'- -GCGGUCcCaGCUCCUCUa----------UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 29441 0.66 0.762919
Target:  5'- aCGCgGGGGgggGGGGAGGggggacgggcGGGCCGc -3'
miRNA:   3'- -GCGgUCCCag-CUCCUCUau--------CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 35856 0.66 0.762919
Target:  5'- aGCgCGGGGUCGcuggcgcaggcgGGGGGGUA-GGCCu- -3'
miRNA:   3'- gCG-GUCCCAGC------------UCCUCUAUcCCGGca -5'
21480 5' -60.2 NC_004812.1 + 26995 0.66 0.762919
Target:  5'- cCGCCGGcGcCGGGGAGGacggccccgccGGGGCCGc -3'
miRNA:   3'- -GCGGUCcCaGCUCCUCUa----------UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 36781 0.66 0.762919
Target:  5'- gGCCGGGGggcgCGGGcGcGGgcucaGGGGCCGc -3'
miRNA:   3'- gCGGUCCCa---GCUC-CuCUa----UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 6812 0.66 0.762919
Target:  5'- gCGCCGGGcGUCuGGGGcuGGGUggGGGGCgGc -3'
miRNA:   3'- -GCGGUCC-CAG-CUCC--UCUA--UCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 154949 0.66 0.762919
Target:  5'- aCGCgGGGGgggGGGGAGGggggacgggcGGGCCGc -3'
miRNA:   3'- -GCGgUCCCag-CUCCUCUau--------CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 40530 0.66 0.762919
Target:  5'- gGCgCGGGG--GAGGGGAgGGGGCgCGg -3'
miRNA:   3'- gCG-GUCCCagCUCCUCUaUCCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 40707 0.66 0.762919
Target:  5'- gGCgCGGGG--GAGGGGAgGGGGCgCGg -3'
miRNA:   3'- gCG-GUCCCagCUCCUCUaUCCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 152776 0.66 0.762919
Target:  5'- gCGCagaGGGG-CGGGGccugGGGcGGGGCCGc -3'
miRNA:   3'- -GCGg--UCCCaGCUCC----UCUaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 37713 0.66 0.762919
Target:  5'- gCGCCGGGcGUCuGGGGcuGGGUggGGGGCgGc -3'
miRNA:   3'- -GCGGUCC-CAG-CUCC--UCUA--UCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 40569 0.66 0.762919
Target:  5'- gGCgCGGGG--GAGGGGAgGGGGCgCGg -3'
miRNA:   3'- gCG-GUCCCagCUCCUCUaUCCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 90003 0.66 0.762919
Target:  5'- gGCCuGGG-CGuGGAGcgGcccgcGGGCCGg -3'
miRNA:   3'- gCGGuCCCaGCuCCUCuaU-----CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 6521 0.66 0.762919
Target:  5'- -aCCAGGagcaGGGGGGGgcggGGGGCCGa -3'
miRNA:   3'- gcGGUCCcag-CUCCUCUa---UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 5880 0.66 0.762919
Target:  5'- gGCCGGGGggcgCGGGcGcGGgcucaGGGGCCGc -3'
miRNA:   3'- gCGGUCCCa---GCUC-CuCUa----UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 129019 0.66 0.761999
Target:  5'- gGcCCGGGGcCGGcggccccGGGGGcGGGGCCGc -3'
miRNA:   3'- gC-GGUCCCaGCU-------CCUCUaUCCCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.