miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 5' -60.2 NC_004812.1 + 96304 0.65 0.768417
Target:  5'- gGCCAGGGcaaggcccccaaGGGGGGGcgcgacggcGGGGCCGg -3'
miRNA:   3'- gCGGUCCCag----------CUCCUCUa--------UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 38169 0.66 0.734877
Target:  5'- gCGCCGGGGccCGcGGGAGGgacccgcGGGCCc- -3'
miRNA:   3'- -GCGGUCCCa-GC-UCCUCUau-----CCCGGca -5'
21480 5' -60.2 NC_004812.1 + 156370 0.66 0.71575
Target:  5'- ---gGGGGggGAGGAGAgcGGGGCCGc -3'
miRNA:   3'- gcggUCCCagCUCCUCUa-UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 62028 0.66 0.729171
Target:  5'- gGCCGGGaaCGAGagacggcgggcggcaGAGGcUGGGGCCGUc -3'
miRNA:   3'- gCGGUCCcaGCUC---------------CUCU-AUCCCGGCA- -5'
21480 5' -60.2 NC_004812.1 + 121115 0.66 0.734877
Target:  5'- aGCCccGGGUCGGGGgcGGGUcggcGGGCCc- -3'
miRNA:   3'- gCGGu-CCCAGCUCC--UCUAu---CCCGGca -5'
21480 5' -60.2 NC_004812.1 + 46119 0.66 0.744319
Target:  5'- gCGCCu-GGUuguaguccagcaCGAGGAGGUGcauGGGCCGc -3'
miRNA:   3'- -GCGGucCCA------------GCUCCUCUAU---CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 68144 0.66 0.731076
Target:  5'- gGCCcGGuGUCGGGGAGuggcuccccggcAGGGUCGg -3'
miRNA:   3'- gCGGuCC-CAGCUCCUCua----------UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 6044 0.66 0.734877
Target:  5'- gCGCCguAGGGcggCGAGGGGAaGGcGGCgGa -3'
miRNA:   3'- -GCGG--UCCCa--GCUCCUCUaUC-CCGgCa -5'
21480 5' -60.2 NC_004812.1 + 36451 0.66 0.734877
Target:  5'- gGCCGcguuGUCGAGGAGcgggGGGGCCc- -3'
miRNA:   3'- gCGGUcc--CAGCUCCUCua--UCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 100057 0.66 0.71575
Target:  5'- aGCgGGGGUCacccucGGAGugugaucgGGGGCCGg -3'
miRNA:   3'- gCGgUCCCAGcu----CCUCua------UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 69006 0.66 0.734877
Target:  5'- aCGCUgcGGGG-CGGGGAGugcGaGGCCGg -3'
miRNA:   3'- -GCGG--UCCCaGCUCCUCuauC-CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 820 0.66 0.734877
Target:  5'- gGCCgGGGGUCcuGGGGGUccggGGuGGCCGg -3'
miRNA:   3'- gCGG-UCCCAGcuCCUCUA----UC-CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 139626 0.66 0.734877
Target:  5'- gCGCCccGGagCGGGGGGc-GGGGCCGa -3'
miRNA:   3'- -GCGGucCCa-GCUCCUCuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 121765 0.66 0.744319
Target:  5'- gGCCuccGGGaggCGGGGgcAGcgAGGGCCGc -3'
miRNA:   3'- gCGGu--CCCa--GCUCC--UCuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 126797 0.66 0.734877
Target:  5'- -cCCAGGGUCcccGGAGGcgGGGcGCCGa -3'
miRNA:   3'- gcGGUCCCAGcu-CCUCUa-UCC-CGGCa -5'
21480 5' -60.2 NC_004812.1 + 148007 0.66 0.71575
Target:  5'- gGCCgAGGG-CGAcGGAGAauguGGGCgGUg -3'
miRNA:   3'- gCGG-UCCCaGCU-CCUCUau--CCCGgCA- -5'
21480 5' -60.2 NC_004812.1 + 122542 0.66 0.744319
Target:  5'- aGUCGGGGgCGGGGGGcgcgggggGGGGCgGa -3'
miRNA:   3'- gCGGUCCCaGCUCCUCua------UCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 77951 0.66 0.724394
Target:  5'- gGUCGGGGUggCGGGGgcgaagaGGGUGuccGGGCCGg -3'
miRNA:   3'- gCGGUCCCA--GCUCC-------UCUAU---CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 91079 0.66 0.71575
Target:  5'- aGaCCGGGGgCGAGGGGGggcgccaGGGGCgCGc -3'
miRNA:   3'- gC-GGUCCCaGCUCCUCUa------UCCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 128831 0.66 0.71575
Target:  5'- gCGCCAGGccUCGGGGAaGAgcGGGUgGUc -3'
miRNA:   3'- -GCGGUCCc-AGCUCCU-CUauCCCGgCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.