miRNA display CGI


Results 41 - 60 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 5' -60.2 NC_004812.1 + 39378 0.66 0.753669
Target:  5'- aCGCCAGaGGU---GGAGAUcgAGcGGCCGg -3'
miRNA:   3'- -GCGGUC-CCAgcuCCUCUA--UC-CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 148566 0.66 0.753669
Target:  5'- gGCCGGGcGcCGGGGGGugccggcGGaGGCCGg -3'
miRNA:   3'- gCGGUCC-CaGCUCCUCua-----UC-CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 77951 0.66 0.724394
Target:  5'- gGUCGGGGUggCGGGGgcgaagaGGGUGuccGGGCCGg -3'
miRNA:   3'- gCGGUCCCA--GCUCC-------UCUAU---CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 8477 0.66 0.753669
Target:  5'- aCGCCAGaGGU---GGAGAUcgAGcGGCCGg -3'
miRNA:   3'- -GCGGUC-CCAgcuCCUCUA--UC-CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 91079 0.66 0.71575
Target:  5'- aGaCCGGGGgCGAGGGGGggcgccaGGGGCgCGc -3'
miRNA:   3'- gC-GGUCCCaGCUCCUCUa------UCCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 72025 0.66 0.725351
Target:  5'- aGCCccgguGGGUCGcAGGAGGcgguggaggggGGGGCUGc -3'
miRNA:   3'- gCGGu----CCCAGC-UCCUCUa----------UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 117665 0.66 0.753669
Target:  5'- gGCCGGGcGcCGGGGGGugccggcGGaGGCCGg -3'
miRNA:   3'- gCGGUCC-CaGCUCCUCua-----UC-CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 153443 0.66 0.744319
Target:  5'- aGUCGGGGgCGGGGGGcgcgggggGGGGCgGa -3'
miRNA:   3'- gCGGUCCCaGCUCCUCua------UCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 108915 0.66 0.748071
Target:  5'- gCGCCcGGGUCGGGuaaucgcccgGGGGUCGUg -3'
miRNA:   3'- -GCGGuCCCAGCUCcucua-----UCCCGGCA- -5'
21480 5' -60.2 NC_004812.1 + 87568 0.66 0.761999
Target:  5'- aGCgCAGGGgCGGguuguuuGGcAGAUAGGGCCc- -3'
miRNA:   3'- gCG-GUCCCaGCU-------CC-UCUAUCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 155564 0.66 0.753669
Target:  5'- gGCCGGGcagGAGGAGAccgcGGGGuuGUa -3'
miRNA:   3'- gCGGUCCcagCUCCUCUa---UCCCggCA- -5'
21480 5' -60.2 NC_004812.1 + 64164 0.66 0.744319
Target:  5'- uGUC-GGGUCGGGucGGGcAGGGCCGg -3'
miRNA:   3'- gCGGuCCCAGCUCc-UCUaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 3323 0.66 0.71575
Target:  5'- gCGCCAGGccUCGGGGAaGAgcGGGUgGUc -3'
miRNA:   3'- -GCGGUCCc-AGCUCCU-CUauCCCGgCA- -5'
21480 5' -60.2 NC_004812.1 + 3511 0.66 0.761999
Target:  5'- gGcCCGGGGcCGGcggccccGGGGGcGGGGCCGc -3'
miRNA:   3'- gC-GGUCCCaGCU-------CCUCUaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 124663 0.66 0.753669
Target:  5'- gGCCGGGcagGAGGAGAccgcGGGGuuGUa -3'
miRNA:   3'- gCGGUCCcagCUCCUCUa---UCCCggCA- -5'
21480 5' -60.2 NC_004812.1 + 129019 0.66 0.761999
Target:  5'- gGcCCGGGGcCGGcggccccGGGGGcGGGGCCGc -3'
miRNA:   3'- gC-GGUCCCaGCU-------CCUCUaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 121875 0.66 0.762919
Target:  5'- gCGCagaGGGG-CGGGGccugGGGcGGGGCCGc -3'
miRNA:   3'- -GCGg--UCCCaGCUCC----UCUaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 154949 0.66 0.762919
Target:  5'- aCGCgGGGGgggGGGGAGGggggacgggcGGGCCGc -3'
miRNA:   3'- -GCGgUCCCag-CUCCUCUau--------CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 5880 0.66 0.762919
Target:  5'- gGCCGGGGggcgCGGGcGcGGgcucaGGGGCCGc -3'
miRNA:   3'- gCGGUCCCa---GCUC-CuCUa----UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 142347 0.66 0.744319
Target:  5'- cCGCCGuGcGGUCGccGAG--GGGGCCGa -3'
miRNA:   3'- -GCGGU-C-CCAGCucCUCuaUCCCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.