Results 61 - 80 of 267 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 148007 | 0.66 | 0.71575 |
Target: 5'- gGCCgAGGG-CGAcGGAGAauguGGGCgGUg -3' miRNA: 3'- gCGG-UCCCaGCU-CCUCUau--CCCGgCA- -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 128831 | 0.66 | 0.71575 |
Target: 5'- gCGCCAGGccUCGGGGAaGAgcGGGUgGUc -3' miRNA: 3'- -GCGGUCCc-AGCUCCU-CUauCCCGgCA- -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 36451 | 0.66 | 0.734877 |
Target: 5'- gGCCGcguuGUCGAGGAGcgggGGGGCCc- -3' miRNA: 3'- gCGGUcc--CAGCUCCUCua--UCCCGGca -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 38169 | 0.66 | 0.734877 |
Target: 5'- gCGCCGGGGccCGcGGGAGGgacccgcGGGCCc- -3' miRNA: 3'- -GCGGUCCCa-GC-UCCUCUau-----CCCGGca -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 6044 | 0.66 | 0.734877 |
Target: 5'- gCGCCguAGGGcggCGAGGGGAaGGcGGCgGa -3' miRNA: 3'- -GCGG--UCCCa--GCUCCUCUaUC-CCGgCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 820 | 0.66 | 0.734877 |
Target: 5'- gGCCgGGGGUCcuGGGGGUccggGGuGGCCGg -3' miRNA: 3'- gCGG-UCCCAGcuCCUCUA----UC-CCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 69006 | 0.66 | 0.734877 |
Target: 5'- aCGCUgcGGGG-CGGGGAGugcGaGGCCGg -3' miRNA: 3'- -GCGG--UCCCaGCUCCUCuauC-CCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 145741 | 0.66 | 0.744319 |
Target: 5'- gCGCCcgcGGGUCGGGGGGcucgucGGUCGUc -3' miRNA: 3'- -GCGGu--CCCAGCUCCUCuauc--CCGGCA- -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 62028 | 0.66 | 0.729171 |
Target: 5'- gGCCGGGaaCGAGagacggcgggcggcaGAGGcUGGGGCCGUc -3' miRNA: 3'- gCGGUCCcaGCUC---------------CUCU-AUCCCGGCA- -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 68144 | 0.66 | 0.731076 |
Target: 5'- gGCCcGGuGUCGGGGAGuggcuccccggcAGGGUCGg -3' miRNA: 3'- gCGGuCC-CAGCUCCUCua----------UCCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 139626 | 0.66 | 0.734877 |
Target: 5'- gCGCCccGGagCGGGGGGc-GGGGCCGa -3' miRNA: 3'- -GCGGucCCa-GCUCCUCuaUCCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 121115 | 0.66 | 0.734877 |
Target: 5'- aGCCccGGGUCGGGGgcGGGUcggcGGGCCc- -3' miRNA: 3'- gCGGu-CCCAGCUCC--UCUAu---CCCGGca -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 122881 | 0.67 | 0.657024 |
Target: 5'- uGCgGGGGUCGuugaccacGGGGAUGGuGCUGUa -3' miRNA: 3'- gCGgUCCCAGCu-------CCUCUAUCcCGGCA- -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 6935 | 0.67 | 0.657024 |
Target: 5'- gGCCGGGGUgGGGGGGAagcGGGGa--- -3' miRNA: 3'- gCGGUCCCAgCUCCUCUa--UCCCggca -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 147836 | 0.67 | 0.706082 |
Target: 5'- gGCCGGaGUgGGGGGGGUGGcGGUgGUg -3' miRNA: 3'- gCGGUCcCAgCUCCUCUAUC-CCGgCA- -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 1934 | 0.67 | 0.700252 |
Target: 5'- gGCCGGGGcgcuccgcccgUCGGGGGGAcgggugcaucgucacUgaGGGGCUGg -3' miRNA: 3'- gCGGUCCC-----------AGCUCCUCU---------------A--UCCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 126935 | 0.67 | 0.706082 |
Target: 5'- gGCCGcGGG--GAGGGGccGGGGCCGc -3' miRNA: 3'- gCGGU-CCCagCUCCUCuaUCCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 116935 | 0.67 | 0.706082 |
Target: 5'- gGCCGGaGUgGGGGGGGUGGcGGUgGUg -3' miRNA: 3'- gCGGUCcCAgCUCCUCUAUC-CCGgCA- -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 68958 | 0.67 | 0.706082 |
Target: 5'- cCGCgAGGGUCGAGuGGGucGUGGuGGUCu- -3' miRNA: 3'- -GCGgUCCCAGCUC-CUC--UAUC-CCGGca -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 100382 | 0.67 | 0.696355 |
Target: 5'- cCGCCGGGGggcgCGAGGccacc-GGCCGg -3' miRNA: 3'- -GCGGUCCCa---GCUCCucuaucCCGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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