miRNA display CGI


Results 81 - 100 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 5' -60.2 NC_004812.1 + 122123 0.67 0.686578
Target:  5'- gGCCAGGGccugggCGAGGAcGGccuGGGCgCGg -3'
miRNA:   3'- gCGGUCCCa-----GCUCCU-CUau-CCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 140798 0.67 0.686578
Target:  5'- gGUCGGGG--GAGGGGAUGGGGaggCGg -3'
miRNA:   3'- gCGGUCCCagCUCCUCUAUCCCg--GCa -5'
21480 5' -60.2 NC_004812.1 + 12103 0.67 0.685597
Target:  5'- gGCCAuguucccguguccGGcGUCGGGGGGGUugGGGGCgCGc -3'
miRNA:   3'- gCGGU-------------CC-CAGCUCCUCUA--UCCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 156319 0.67 0.676758
Target:  5'- gGCgGGGGaCG-GGAG--GGGGCCGa -3'
miRNA:   3'- gCGgUCCCaGCuCCUCuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 156010 0.67 0.676758
Target:  5'- gGCgCGGGG--GAGGGGAcgcccGGGGCCGg -3'
miRNA:   3'- gCG-GUCCCagCUCCUCUa----UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 13012 0.67 0.696355
Target:  5'- cCGCCGGaGG-CGGccugaucgccGGGGGUcgcGGGGCCGg -3'
miRNA:   3'- -GCGGUC-CCaGCU----------CCUCUA---UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 116935 0.67 0.706082
Target:  5'- gGCCGGaGUgGGGGGGGUGGcGGUgGUg -3'
miRNA:   3'- gCGGUCcCAgCUCCUCUAUC-CCGgCA- -5'
21480 5' -60.2 NC_004812.1 + 17413 0.67 0.696355
Target:  5'- gGCgGGGGUgGuggugggggcGGGGGUGGcGGCCGUc -3'
miRNA:   3'- gCGgUCCCAgCu---------CCUCUAUC-CCGGCA- -5'
21480 5' -60.2 NC_004812.1 + 39739 0.67 0.676758
Target:  5'- aGCUacuacGGGGUUGuucccgggcGGGGGGUGGGGCgGg -3'
miRNA:   3'- gCGG-----UCCCAGC---------UCCUCUAUCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 35744 0.67 0.696355
Target:  5'- aGCCcccugcGGGGcCGGGGA---GGGGCCGc -3'
miRNA:   3'- gCGG------UCCCaGCUCCUcuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 153024 0.67 0.686578
Target:  5'- gGCCAGGGccugggCGAGGAcGGccuGGGCgCGg -3'
miRNA:   3'- gCGGUCCCa-----GCUCCU-CUau-CCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 44169 0.67 0.68069
Target:  5'- gCGCuCGGGGgccgagccggucugCGGcGGGGGUGGGGCuCGg -3'
miRNA:   3'- -GCG-GUCCCa-------------GCU-CCUCUAUCCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 142399 0.67 0.676758
Target:  5'- cCGCCGGGGgCGGGGccGAggacGGCCGg -3'
miRNA:   3'- -GCGGUCCCaGCUCCu-CUauc-CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 37548 0.67 0.676758
Target:  5'- gGagGGGGUgGGGGAGAUGGGGgaGa -3'
miRNA:   3'- gCggUCCCAgCUCCUCUAUCCCggCa -5'
21480 5' -60.2 NC_004812.1 + 30811 0.67 0.676758
Target:  5'- gGCgGGGGaCG-GGAG--GGGGCCGa -3'
miRNA:   3'- gCGgUCCCaGCuCCUCuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 30502 0.67 0.676758
Target:  5'- gGCgCGGGG--GAGGGGAcgcccGGGGCCGg -3'
miRNA:   3'- gCG-GUCCCagCUCCUCUa----UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 153782 0.67 0.657024
Target:  5'- uGCgGGGGUCGuugaccacGGGGAUGGuGCUGUa -3'
miRNA:   3'- gCGgUCCCAGCu-------CCUCUAUCcCGGCA- -5'
21480 5' -60.2 NC_004812.1 + 37836 0.67 0.657024
Target:  5'- gGCCGGGGUgGGGGGGAagcGGGGa--- -3'
miRNA:   3'- gCGGUCCCAgCUCCUCUa--UCCCggca -5'
21480 5' -60.2 NC_004812.1 + 39534 0.67 0.696355
Target:  5'- aCGCgAGGGgcgGGGGAGcgGGcGGCCa- -3'
miRNA:   3'- -GCGgUCCCag-CUCCUCuaUC-CCGGca -5'
21480 5' -60.2 NC_004812.1 + 146199 0.67 0.683636
Target:  5'- aCGCgGGGGUCGGGGcGGAUcgcguucugggcauGGGcGCCc- -3'
miRNA:   3'- -GCGgUCCCAGCUCC-UCUA--------------UCC-CGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.