Results 41 - 60 of 267 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 150841 | 0.72 | 0.379207 |
Target: 5'- cCGCgAGcGGaCGGGGAGAggagaGGGGCCGg -3' miRNA: 3'- -GCGgUC-CCaGCUCCUCUa----UCCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 156179 | 0.72 | 0.420466 |
Target: 5'- gGCCgcgcgaggaaGGGGagGGGGGGAgGGGGCCGc -3' miRNA: 3'- gCGG----------UCCCagCUCCUCUaUCCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 102944 | 0.72 | 0.411998 |
Target: 5'- cCGCgGGGGUggCGGGGGGGcgucGGGGUCGUa -3' miRNA: 3'- -GCGgUCCCA--GCUCCUCUa---UCCCGGCA- -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 27790 | 0.72 | 0.403636 |
Target: 5'- cCGCCGGGGgaGAGGGc--GGGGCCGg -3' miRNA: 3'- -GCGGUCCCagCUCCUcuaUCCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 125164 | 0.72 | 0.395383 |
Target: 5'- gCGCCGGGG-CG-GGAGGcgggAGGGCCc- -3' miRNA: 3'- -GCGGUCCCaGCuCCUCUa---UCCCGGca -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 49736 | 0.71 | 0.429038 |
Target: 5'- gGCCgacGGGGUCGGGGucgcGGcgGGGGCCc- -3' miRNA: 3'- gCGG---UCCCAGCUCC----UCuaUCCCGGca -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 72493 | 0.71 | 0.432495 |
Target: 5'- gCGCCucGGGGUCGGGGggcgcgccgccgccgGGGUccGGGCCGg -3' miRNA: 3'- -GCGG--UCCCAGCUCC---------------UCUAu-CCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 155308 | 0.71 | 0.446485 |
Target: 5'- gGCCcgGGGGUCGGcgccccgccuccGGGGAcccugGGGGCCGg -3' miRNA: 3'- gCGG--UCCCAGCU------------CCUCUa----UCCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 79013 | 0.71 | 0.437712 |
Target: 5'- gCGCCgGGGGUUGGGGgucggcuggcugGGGUcgGGGGCCGc -3' miRNA: 3'- -GCGG-UCCCAGCUCC------------UCUA--UCCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 155879 | 0.71 | 0.437712 |
Target: 5'- gCGgCGGGGgaGGGGAGGggcGGGGCCGg -3' miRNA: 3'- -GCgGUCCCagCUCCUCUa--UCCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 150447 | 0.71 | 0.429038 |
Target: 5'- aCGaCAGGGgCGGGGAGAgAGGGCgGa -3' miRNA: 3'- -GCgGUCCCaGCUCCUCUaUCCCGgCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 124250 | 0.71 | 0.446485 |
Target: 5'- gGCC-GGGUCGAGGGcGGUcgugGGGGCgGg -3' miRNA: 3'- gCGGuCCCAGCUCCU-CUA----UCCCGgCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 59614 | 0.71 | 0.446485 |
Target: 5'- gCGCUagAGGG-CGuGGGGGUGGGGCgGg -3' miRNA: 3'- -GCGG--UCCCaGCuCCUCUAUCCCGgCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 30371 | 0.71 | 0.437712 |
Target: 5'- gCGgCGGGGgaGGGGAGGggcGGGGCCGg -3' miRNA: 3'- -GCgGUCCCagCUCCUCUa--UCCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 77457 | 0.71 | 0.473379 |
Target: 5'- gGCCGGGGggcucguggCGAgcGGAGGcGGGGCUGg -3' miRNA: 3'- gCGGUCCCa--------GCU--CCUCUaUCCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 68225 | 0.71 | 0.473379 |
Target: 5'- gGCCGGGGgugCGcGGGGGccGGGGCCu- -3' miRNA: 3'- gCGGUCCCa--GC-UCCUCuaUCCCGGca -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 72300 | 0.71 | 0.472469 |
Target: 5'- gGCCGGGG-CGGGGGGAcGGaucgaucgggcgcGGCCGg -3' miRNA: 3'- gCGGUCCCaGCUCCUCUaUC-------------CCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 106554 | 0.71 | 0.464322 |
Target: 5'- aCGCCGGGGagcugaggGAGGAGGcgcccGGGCCGg -3' miRNA: 3'- -GCGGUCCCag------CUCCUCUau---CCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 3322 | 0.71 | 0.464322 |
Target: 5'- aGCCAGGG--GAGGGGcccgaGGGGCCGc -3' miRNA: 3'- gCGGUCCCagCUCCUCua---UCCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 29800 | 0.71 | 0.446485 |
Target: 5'- gGCCcgGGGGUCGGcgccccgccuccGGGGAcccugGGGGCCGg -3' miRNA: 3'- gCGG--UCCCAGCU------------CCUCUa----UCCCGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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