Results 1 - 20 of 267 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 71991 | 1.06 | 0.002004 |
Target: 5'- uCGCCAGGGUCGAGGAGAUAGGGCCGUc -3' miRNA: 3'- -GCGGUCCCAGCUCCUCUAUCCCGGCA- -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 111967 | 0.8 | 0.128909 |
Target: 5'- cCGCCGGGGUC--GGAGAaGGGGCCGc -3' miRNA: 3'- -GCGGUCCCAGcuCCUCUaUCCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 84941 | 0.76 | 0.220957 |
Target: 5'- cCGCC-GGGUCGAguggcugggGGAGGcgUGGGGCCGg -3' miRNA: 3'- -GCGGuCCCAGCU---------CCUCU--AUCCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 36893 | 0.76 | 0.226252 |
Target: 5'- gCGCCgAGGGUCGGGGGGAcgagGGGGaCGg -3' miRNA: 3'- -GCGG-UCCCAGCUCCUCUa---UCCCgGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 37159 | 0.76 | 0.231655 |
Target: 5'- gCGCCcGcGGUCGGGGGGGagcUAGGGCCa- -3' miRNA: 3'- -GCGGuC-CCAGCUCCUCU---AUCCCGGca -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 6258 | 0.76 | 0.231655 |
Target: 5'- gCGCCcGcGGUCGGGGGGGagcUAGGGCCa- -3' miRNA: 3'- -GCGGuC-CCAGCUCCUCU---AUCCCGGca -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 91118 | 0.76 | 0.237166 |
Target: 5'- gGCCguGGGGUCGcuuGGGGGcGGGGCCGg -3' miRNA: 3'- gCGG--UCCCAGCu--CCUCUaUCCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 992 | 0.75 | 0.254359 |
Target: 5'- uCGCCGGGGUCcuGGGGGUccGGGGUCGc -3' miRNA: 3'- -GCGGUCCCAGcuCCUCUA--UCCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 37033 | 0.75 | 0.254359 |
Target: 5'- uGCCGGGGaaggcgggCGAGGGGAagGGGGUCGg -3' miRNA: 3'- gCGGUCCCa-------GCUCCUCUa-UCCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 6132 | 0.75 | 0.254359 |
Target: 5'- uGCCGGGGaaggcgggCGAGGGGAagGGGGUCGg -3' miRNA: 3'- gCGGUCCCa-------GCUCCUCUa-UCCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 16826 | 0.75 | 0.254359 |
Target: 5'- gCGCCgcGGGGUCG-GGGGGUAGGGgUGg -3' miRNA: 3'- -GCGG--UCCCAGCuCCUCUAUCCCgGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 100845 | 0.75 | 0.254359 |
Target: 5'- aCGCCGGGGagggCGAGGAc--GGGGCCGc -3' miRNA: 3'- -GCGGUCCCa---GCUCCUcuaUCCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 36904 | 0.75 | 0.260313 |
Target: 5'- gCGCCGGGGggCGAGGGGAaGGGGaCGc -3' miRNA: 3'- -GCGGUCCCa-GCUCCUCUaUCCCgGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 17154 | 0.75 | 0.262726 |
Target: 5'- gGCCGGGGggagucguggcgucCGAGGGGAcAGGGCCa- -3' miRNA: 3'- gCGGUCCCa-------------GCUCCUCUaUCCCGGca -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 29234 | 0.75 | 0.272562 |
Target: 5'- gGCgGGGGUCGcGGAGGagcGGGCCGg -3' miRNA: 3'- gCGgUCCCAGCuCCUCUau-CCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 154742 | 0.75 | 0.272562 |
Target: 5'- gGCgGGGGUCGcGGAGGagcGGGCCGg -3' miRNA: 3'- gCGgUCCCAGCuCCUCUau-CCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 105649 | 0.74 | 0.298439 |
Target: 5'- aCGCCGGGGUacaccccggCGuGGuGGUGGGGCgCGUa -3' miRNA: 3'- -GCGGUCCCA---------GCuCCuCUAUCCCG-GCA- -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 148198 | 0.74 | 0.305199 |
Target: 5'- gGCCucacGGGUCGAGGGcugcGggGGGGCCGc -3' miRNA: 3'- gCGGu---CCCAGCUCCU----CuaUCCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 54679 | 0.74 | 0.305199 |
Target: 5'- gGCCGGGucgcggCGAGGAGGgcgAGGGCCa- -3' miRNA: 3'- gCGGUCCca----GCUCCUCUa--UCCCGGca -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 6002 | 0.74 | 0.312076 |
Target: 5'- gCGCCGGGGggCGAGGGGAagGGGGaCGc -3' miRNA: 3'- -GCGGUCCCa-GCUCCUCUa-UCCCgGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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