miRNA display CGI


Results 41 - 60 of 267 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 5' -60.2 NC_004812.1 + 27790 0.72 0.403636
Target:  5'- cCGCCGGGGgaGAGGGc--GGGGCCGg -3'
miRNA:   3'- -GCGGUCCCagCUCCUcuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 16748 0.72 0.403636
Target:  5'- gGCCuGGGgcucagUCGGGGGGcgcgGGGGCCGg -3'
miRNA:   3'- gCGGuCCC------AGCUCCUCua--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 102944 0.72 0.411998
Target:  5'- cCGCgGGGGUggCGGGGGGGcgucGGGGUCGUa -3'
miRNA:   3'- -GCGgUCCCA--GCUCCUCUa---UCCCGGCA- -5'
21480 5' -60.2 NC_004812.1 + 156179 0.72 0.420466
Target:  5'- gGCCgcgcgaggaaGGGGagGGGGGGAgGGGGCCGc -3'
miRNA:   3'- gCGG----------UCCCagCUCCUCUaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 30671 0.72 0.420466
Target:  5'- gGCCgcgcgaggaaGGGGagGGGGGGAgGGGGCCGc -3'
miRNA:   3'- gCGG----------UCCCagCUCCUCUaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 49736 0.71 0.429038
Target:  5'- gGCCgacGGGGUCGGGGucgcGGcgGGGGCCc- -3'
miRNA:   3'- gCGG---UCCCAGCUCC----UCuaUCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 150447 0.71 0.429038
Target:  5'- aCGaCAGGGgCGGGGAGAgAGGGCgGa -3'
miRNA:   3'- -GCgGUCCCaGCUCCUCUaUCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 72493 0.71 0.432495
Target:  5'- gCGCCucGGGGUCGGGGggcgcgccgccgccgGGGUccGGGCCGg -3'
miRNA:   3'- -GCGG--UCCCAGCUCC---------------UCUAu-CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 155879 0.71 0.437712
Target:  5'- gCGgCGGGGgaGGGGAGGggcGGGGCCGg -3'
miRNA:   3'- -GCgGUCCCagCUCCUCUa--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 79013 0.71 0.437712
Target:  5'- gCGCCgGGGGUUGGGGgucggcuggcugGGGUcgGGGGCCGc -3'
miRNA:   3'- -GCGG-UCCCAGCUCC------------UCUA--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 30371 0.71 0.437712
Target:  5'- gCGgCGGGGgaGGGGAGGggcGGGGCCGg -3'
miRNA:   3'- -GCgGUCCCagCUCCUCUa--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 59614 0.71 0.446485
Target:  5'- gCGCUagAGGG-CGuGGGGGUGGGGCgGg -3'
miRNA:   3'- -GCGG--UCCCaGCuCCUCUAUCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 124250 0.71 0.446485
Target:  5'- gGCC-GGGUCGAGGGcGGUcgugGGGGCgGg -3'
miRNA:   3'- gCGGuCCCAGCUCCU-CUA----UCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 155151 0.71 0.446485
Target:  5'- gGCC-GGGUCGAGGGcGGUcgugGGGGCgGg -3'
miRNA:   3'- gCGGuCCCAGCUCCU-CUA----UCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 155308 0.71 0.446485
Target:  5'- gGCCcgGGGGUCGGcgccccgccuccGGGGAcccugGGGGCCGg -3'
miRNA:   3'- gCGG--UCCCAGCU------------CCUCUa----UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 29800 0.71 0.446485
Target:  5'- gGCCcgGGGGUCGGcgccccgccuccGGGGAcccugGGGGCCGg -3'
miRNA:   3'- gCGG--UCCCAGCU------------CCUCUa----UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 19669 0.71 0.455357
Target:  5'- cCGCCGGGGgccgCGGGGAcg-AGGGCgGc -3'
miRNA:   3'- -GCGGUCCCa---GCUCCUcuaUCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 34223 0.71 0.464322
Target:  5'- aGCCAGGG--GAGGGGcccgaGGGGCCGc -3'
miRNA:   3'- gCGGUCCCagCUCCUCua---UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 106554 0.71 0.464322
Target:  5'- aCGCCGGGGagcugaggGAGGAGGcgcccGGGCCGg -3'
miRNA:   3'- -GCGGUCCCag------CUCCUCUau---CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 3322 0.71 0.464322
Target:  5'- aGCCAGGG--GAGGGGcccgaGGGGCCGc -3'
miRNA:   3'- gCGGUCCCagCUCCUCua---UCCCGGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.