miRNA display CGI


Results 61 - 80 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 5' -60.2 NC_004812.1 + 1971 0.71 0.464322
Target:  5'- gCGCCGGGGggaGGGGGGGaGGGGUgGc -3'
miRNA:   3'- -GCGGUCCCag-CUCCUCUaUCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 34223 0.71 0.464322
Target:  5'- aGCCAGGG--GAGGGGcccgaGGGGCCGc -3'
miRNA:   3'- gCGGUCCCagCUCCUCua---UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 72300 0.71 0.472469
Target:  5'- gGCCGGGG-CGGGGGGAcGGaucgaucgggcgcGGCCGg -3'
miRNA:   3'- gCGGUCCCaGCUCCUCUaUC-------------CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 77457 0.71 0.473379
Target:  5'- gGCCGGGGggcucguggCGAgcGGAGGcGGGGCUGg -3'
miRNA:   3'- gCGGUCCCa--------GCU--CCUCUaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 68225 0.71 0.473379
Target:  5'- gGCCGGGGgugCGcGGGGGccGGGGCCu- -3'
miRNA:   3'- gCGGUCCCa--GC-UCCUCuaUCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 6076 0.7 0.482523
Target:  5'- gGCgaAGGGgggCGAGGGGAagGGGGUCGg -3'
miRNA:   3'- gCGg-UCCCa--GCUCCUCUa-UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 36554 0.7 0.482523
Target:  5'- uCGCCGGGcG-CGAGGGGAgcccgcaGGGGCaCGg -3'
miRNA:   3'- -GCGGUCC-CaGCUCCUCUa------UCCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 5653 0.7 0.482523
Target:  5'- uCGCCGGGcG-CGAGGGGAgcccgcaGGGGCaCGg -3'
miRNA:   3'- -GCGGUCC-CaGCUCCUCUa------UCCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 36977 0.7 0.482523
Target:  5'- gGCgaAGGGgggCGAGGGGAagGGGGUCGg -3'
miRNA:   3'- gCGg-UCCCa--GCUCCUCUa-UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 70653 0.7 0.490826
Target:  5'- gCGCCcuGGGGUCGGGuGGAUgggcaaaGGGGUCGg -3'
miRNA:   3'- -GCGG--UCCCAGCUCcUCUA-------UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 99224 0.7 0.501062
Target:  5'- uCGCguGGGgcagCGGGGAGGUGaagcGGGCgGUc -3'
miRNA:   3'- -GCGguCCCa---GCUCCUCUAU----CCCGgCA- -5'
21480 5' -60.2 NC_004812.1 + 11305 0.7 0.510448
Target:  5'- cCGCgCGGGGcgcCGcGGGGcgGGGGCCGg -3'
miRNA:   3'- -GCG-GUCCCa--GCuCCUCuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 105798 0.7 0.510448
Target:  5'- uCGCCGGGGggCuuGGGGGUGGGGgcuCCGg -3'
miRNA:   3'- -GCGGUCCCa-GcuCCUCUAUCCC---GGCa -5'
21480 5' -60.2 NC_004812.1 + 81988 0.7 0.510448
Target:  5'- gGCgGGGGccgUCGAGGAGcUGGGcgugGCCGUg -3'
miRNA:   3'- gCGgUCCC---AGCUCCUCuAUCC----CGGCA- -5'
21480 5' -60.2 NC_004812.1 + 17932 0.7 0.510448
Target:  5'- gGCCc-GGUCGGGGGGGgagagGGGGUCGc -3'
miRNA:   3'- gCGGucCCAGCUCCUCUa----UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 78727 0.7 0.519908
Target:  5'- uCGCCcGGcG-CGAGGAGGUccGGGCCGc -3'
miRNA:   3'- -GCGGuCC-CaGCUCCUCUAu-CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 7945 0.7 0.519908
Target:  5'- gGCCGGGGggcgCGuccGGGG--GGGGCCGa -3'
miRNA:   3'- gCGGUCCCa---GCu--CCUCuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 38846 0.7 0.519908
Target:  5'- gGCCGGGGggcgCGuccGGGG--GGGGCCGa -3'
miRNA:   3'- gCGGUCCCa---GCu--CCUCuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 62155 0.7 0.519908
Target:  5'- gCGcCCAGGGaaaCGAGGaAGAgcggccggGGGGCCGc -3'
miRNA:   3'- -GC-GGUCCCa--GCUCC-UCUa-------UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 70912 0.7 0.529435
Target:  5'- uCGCgCGGGGgggCG-GGAGGUGGGaucuGCCGUc -3'
miRNA:   3'- -GCG-GUCCCa--GCuCCUCUAUCC----CGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.