miRNA display CGI


Results 81 - 100 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 5' -60.2 NC_004812.1 + 70881 0.7 0.529435
Target:  5'- gCGCgGGGGgggCGGGGAG--GGGGCgGg -3'
miRNA:   3'- -GCGgUCCCa--GCUCCUCuaUCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 106579 0.69 0.539025
Target:  5'- uCGCCAGGGggcccgCGGGGGGG-AGcGCCGc -3'
miRNA:   3'- -GCGGUCCCa-----GCUCCUCUaUCcCGGCa -5'
21480 5' -60.2 NC_004812.1 + 114993 0.69 0.539025
Target:  5'- aCGUCAGGGUgGAGGAGGcAGacGCUGUc -3'
miRNA:   3'- -GCGGUCCCAgCUCCUCUaUCc-CGGCA- -5'
21480 5' -60.2 NC_004812.1 + 143876 0.69 0.539025
Target:  5'- uCGCgGGGGU---GGGGGUGGGGCgGUg -3'
miRNA:   3'- -GCGgUCCCAgcuCCUCUAUCCCGgCA- -5'
21480 5' -60.2 NC_004812.1 + 724 0.69 0.539025
Target:  5'- gCGCCGGcgcGGUCGccggcGGGGGUGGGGgCGg -3'
miRNA:   3'- -GCGGUC---CCAGCu----CCUCUAUCCCgGCa -5'
21480 5' -60.2 NC_004812.1 + 31625 0.69 0.539025
Target:  5'- gCGCCGGcgcGGUCGccggcGGGGGUGGGGgCGg -3'
miRNA:   3'- -GCGGUC---CCAGCu----CCUCUAUCCCgGCa -5'
21480 5' -60.2 NC_004812.1 + 38678 0.69 0.539025
Target:  5'- gGUCAGGuccaucgcaccGaCGAGGGGGUAGGGCaCGUu -3'
miRNA:   3'- gCGGUCC-----------CaGCUCCUCUAUCCCG-GCA- -5'
21480 5' -60.2 NC_004812.1 + 7545 0.69 0.548675
Target:  5'- gCGCggggaCGGGGgagcgCGGGGAGAcucUGGGGUCGg -3'
miRNA:   3'- -GCG-----GUCCCa----GCUCCUCU---AUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 38446 0.69 0.548675
Target:  5'- gCGCggggaCGGGGgagcgCGGGGAGAcucUGGGGUCGg -3'
miRNA:   3'- -GCG-----GUCCCa----GCUCCUCU---AUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 104777 0.69 0.548675
Target:  5'- aCGCgGgGGGUCcAGGGGccGUAGGGCUGg -3'
miRNA:   3'- -GCGgU-CCCAGcUCCUC--UAUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 46510 0.69 0.548675
Target:  5'- gGUCccgGGGGUCGucuGGGGGAgcAGGGCCGc -3'
miRNA:   3'- gCGG---UCCCAGC---UCCUCUa-UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 61262 0.69 0.548675
Target:  5'- -uCCGGGGgCGGGGAGGgggGGGuGCUGUg -3'
miRNA:   3'- gcGGUCCCaGCUCCUCUa--UCC-CGGCA- -5'
21480 5' -60.2 NC_004812.1 + 117612 0.69 0.558377
Target:  5'- gGCCGGGGgagGGGGGGcgGcgcGGGCCGc -3'
miRNA:   3'- gCGGUCCCag-CUCCUCuaU---CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 940 0.69 0.558377
Target:  5'- uCGCCgGGGGUCcuGGGGGUccGGGGUCGc -3'
miRNA:   3'- -GCGG-UCCCAGcuCCUCUA--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 8247 0.69 0.558377
Target:  5'- gGCCGGGGguccgccccCGGGGGcgccgGGGGCCGg -3'
miRNA:   3'- gCGGUCCCa--------GCUCCUcua--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 148513 0.69 0.558377
Target:  5'- gGCCGGGGgagGGGGGGcgGcgcGGGCCGc -3'
miRNA:   3'- gCGGUCCCag-CUCCUCuaU---CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 13388 0.69 0.558377
Target:  5'- gCGCCgGGGGUCGGGGgcgcggcggGGGUGacGGCCGg -3'
miRNA:   3'- -GCGG-UCCCAGCUCC---------UCUAUc-CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 888 0.69 0.558377
Target:  5'- uCGCCgGGGGUCcuGGGGGUccGGGGUCGc -3'
miRNA:   3'- -GCGG-UCCCAGcuCCUCUA--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 31789 0.69 0.558377
Target:  5'- uCGCCgGGGGUCcuGGGGGUccGGGGUCGc -3'
miRNA:   3'- -GCGG-UCCCAGcuCCUCUA--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 45457 0.69 0.558377
Target:  5'- cCGCCGGGGgggCGAGGAGcccgAGcGGCa-- -3'
miRNA:   3'- -GCGGUCCCa--GCUCCUCua--UC-CCGgca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.