Results 21 - 40 of 267 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 87568 | 0.66 | 0.761999 |
Target: 5'- aGCgCAGGGgCGGguuguuuGGcAGAUAGGGCCc- -3' miRNA: 3'- gCG-GUCCCaGCU-------CC-UCUAUCCCGGca -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 129019 | 0.66 | 0.761999 |
Target: 5'- gGcCCGGGGcCGGcggccccGGGGGcGGGGCCGc -3' miRNA: 3'- gC-GGUCCCaGCU-------CCUCUaUCCCGGCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 43001 | 0.66 | 0.753669 |
Target: 5'- uGCgGGGG-CGGuGGGGGUgcgGGGGCgGUg -3' miRNA: 3'- gCGgUCCCaGCU-CCUCUA---UCCCGgCA- -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 43035 | 0.66 | 0.753669 |
Target: 5'- uGCgGGGG-CGGuGGGGGUgcgGGGGCgGUg -3' miRNA: 3'- gCGgUCCCaGCU-CCUCUA---UCCCGgCA- -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 117665 | 0.66 | 0.753669 |
Target: 5'- gGCCGGGcGcCGGGGGGugccggcGGaGGCCGg -3' miRNA: 3'- gCGGUCC-CaGCUCCUCua-----UC-CCGGCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 124663 | 0.66 | 0.753669 |
Target: 5'- gGCCGGGcagGAGGAGAccgcGGGGuuGUa -3' miRNA: 3'- gCGGUCCcagCUCCUCUa---UCCCggCA- -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 39378 | 0.66 | 0.753669 |
Target: 5'- aCGCCAGaGGU---GGAGAUcgAGcGGCCGg -3' miRNA: 3'- -GCGGUC-CCAgcuCCUCUA--UC-CCGGCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 155564 | 0.66 | 0.753669 |
Target: 5'- gGCCGGGcagGAGGAGAccgcGGGGuuGUa -3' miRNA: 3'- gCGGUCCcagCUCCUCUa---UCCCggCA- -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 148566 | 0.66 | 0.753669 |
Target: 5'- gGCCGGGcGcCGGGGGGugccggcGGaGGCCGg -3' miRNA: 3'- gCGGUCC-CaGCUCCUCua-----UC-CCGGCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 122778 | 0.66 | 0.753669 |
Target: 5'- cCGCCgAGGGUgacCGAGGAc--GGGGCgGg -3' miRNA: 3'- -GCGG-UCCCA---GCUCCUcuaUCCCGgCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 8477 | 0.66 | 0.753669 |
Target: 5'- aCGCCAGaGGU---GGAGAUcgAGcGGCCGg -3' miRNA: 3'- -GCGGUC-CCAgcuCCUCUA--UC-CCGGCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 108915 | 0.66 | 0.748071 |
Target: 5'- gCGCCcGGGUCGGGuaaucgcccgGGGGUCGUg -3' miRNA: 3'- -GCGGuCCCAGCUCcucua-----UCCCGGCA- -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 46119 | 0.66 | 0.744319 |
Target: 5'- gCGCCu-GGUuguaguccagcaCGAGGAGGUGcauGGGCCGc -3' miRNA: 3'- -GCGGucCCA------------GCUCCUCUAU---CCCGGCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 121765 | 0.66 | 0.744319 |
Target: 5'- gGCCuccGGGaggCGGGGgcAGcgAGGGCCGc -3' miRNA: 3'- gCGGu--CCCa--GCUCC--UCuaUCCCGGCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 145741 | 0.66 | 0.744319 |
Target: 5'- gCGCCcgcGGGUCGGGGGGcucgucGGUCGUc -3' miRNA: 3'- -GCGGu--CCCAGCUCCUCuauc--CCGGCA- -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 122542 | 0.66 | 0.744319 |
Target: 5'- aGUCGGGGgCGGGGGGcgcgggggGGGGCgGa -3' miRNA: 3'- gCGGUCCCaGCUCCUCua------UCCCGgCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 142347 | 0.66 | 0.744319 |
Target: 5'- cCGCCGuGcGGUCGccGAG--GGGGCCGa -3' miRNA: 3'- -GCGGU-C-CCAGCucCUCuaUCCCGGCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 54566 | 0.66 | 0.744319 |
Target: 5'- gCGCCGGGG-CGccgcGGGAGAcGGaGGCgGa -3' miRNA: 3'- -GCGGUCCCaGC----UCCUCUaUC-CCGgCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 153443 | 0.66 | 0.744319 |
Target: 5'- aGUCGGGGgCGGGGGGcgcgggggGGGGCgGa -3' miRNA: 3'- gCGGUCCCaGCUCCUCua------UCCCGgCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 64164 | 0.66 | 0.744319 |
Target: 5'- uGUC-GGGUCGGGucGGGcAGGGCCGg -3' miRNA: 3'- gCGGuCCCAGCUCc-UCUaUCCCGGCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home