miRNA display CGI


Results 41 - 60 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 5' -60.2 NC_004812.1 + 21964 0.66 0.743379
Target:  5'- aCGCCGuGGUgcucgcgCGGGGAGGggggcAGGGCCa- -3'
miRNA:   3'- -GCGGUcCCA-------GCUCCUCUa----UCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 124382 0.66 0.738664
Target:  5'- gCGCgAGGa-CGAGGAGAUccucgcgcuggugcaGcGGGCCGUg -3'
miRNA:   3'- -GCGgUCCcaGCUCCUCUA---------------U-CCCGGCA- -5'
21480 5' -60.2 NC_004812.1 + 820 0.66 0.734877
Target:  5'- gGCCgGGGGUCcuGGGGGUccggGGuGGCCGg -3'
miRNA:   3'- gCGG-UCCCAGcuCCUCUA----UC-CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 6044 0.66 0.734877
Target:  5'- gCGCCguAGGGcggCGAGGGGAaGGcGGCgGa -3'
miRNA:   3'- -GCGG--UCCCa--GCUCCUCUaUC-CCGgCa -5'
21480 5' -60.2 NC_004812.1 + 36451 0.66 0.734877
Target:  5'- gGCCGcguuGUCGAGGAGcgggGGGGCCc- -3'
miRNA:   3'- gCGGUcc--CAGCUCCUCua--UCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 38169 0.66 0.734877
Target:  5'- gCGCCGGGGccCGcGGGAGGgacccgcGGGCCc- -3'
miRNA:   3'- -GCGGUCCCa-GC-UCCUCUau-----CCCGGca -5'
21480 5' -60.2 NC_004812.1 + 139626 0.66 0.734877
Target:  5'- gCGCCccGGagCGGGGGGc-GGGGCCGa -3'
miRNA:   3'- -GCGGucCCa-GCUCCUCuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 69006 0.66 0.734877
Target:  5'- aCGCUgcGGGG-CGGGGAGugcGaGGCCGg -3'
miRNA:   3'- -GCGG--UCCCaGCUCCUCuauC-CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 31721 0.66 0.734877
Target:  5'- gGCCgGGGGUCcuGGGGGUccggGGuGGCCGg -3'
miRNA:   3'- gCGG-UCCCAGcuCCUCUA----UC-CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 152016 0.66 0.734877
Target:  5'- aGCCccGGGUCGGGGgcGGGUcggcGGGCCc- -3'
miRNA:   3'- gCGGu-CCCAGCUCC--UCUAu---CCCGGca -5'
21480 5' -60.2 NC_004812.1 + 1289 0.66 0.734877
Target:  5'- -cCCAGGGUCcccGGAGGcgGGGcGCCGa -3'
miRNA:   3'- gcGGUCCCAGcu-CCUCUa-UCC-CGGCa -5'
21480 5' -60.2 NC_004812.1 + 12816 0.66 0.734877
Target:  5'- gGCCGauGGGgagUGGGcGGGGaAGGGCCGa -3'
miRNA:   3'- gCGGU--CCCa--GCUC-CUCUaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 36945 0.66 0.734877
Target:  5'- gCGCCguAGGGcggCGAGGGGAaGGcGGCgGa -3'
miRNA:   3'- -GCGG--UCCCa--GCUCCUCUaUC-CCGgCa -5'
21480 5' -60.2 NC_004812.1 + 121115 0.66 0.734877
Target:  5'- aGCCccGGGUCGGGGgcGGGUcggcGGGCCc- -3'
miRNA:   3'- gCGGu-CCCAGCUCC--UCUAu---CCCGGca -5'
21480 5' -60.2 NC_004812.1 + 126797 0.66 0.734877
Target:  5'- -cCCAGGGUCcccGGAGGcgGGGcGCCGa -3'
miRNA:   3'- gcGGUCCCAGcu-CCUCUa-UCC-CGGCa -5'
21480 5' -60.2 NC_004812.1 + 16506 0.66 0.732028
Target:  5'- gGCCGGGGggcgcgggggCGAugcgcucacgcgugGGAGGUGGGcaGCCGg -3'
miRNA:   3'- gCGGUCCCa---------GCU--------------CCUCUAUCC--CGGCa -5'
21480 5' -60.2 NC_004812.1 + 10499 0.66 0.731076
Target:  5'- gGCuCGGGGUaGGGGAGAgaagccggaggcgGGGGCgGg -3'
miRNA:   3'- gCG-GUCCCAgCUCCUCUa------------UCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 68144 0.66 0.731076
Target:  5'- gGCCcGGuGUCGGGGAGuggcuccccggcAGGGUCGg -3'
miRNA:   3'- gCGGuCC-CAGCUCCUCua----------UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 62028 0.66 0.729171
Target:  5'- gGCCGGGaaCGAGagacggcgggcggcaGAGGcUGGGGCCGUc -3'
miRNA:   3'- gCGGUCCcaGCUC---------------CUCU-AUCCCGGCA- -5'
21480 5' -60.2 NC_004812.1 + 54423 0.66 0.725351
Target:  5'- cCGCCGGGuGUCGAugggcccgccgcGGGcccccgacGAcGGGGCCGa -3'
miRNA:   3'- -GCGGUCC-CAGCU------------CCU--------CUaUCCCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.