miRNA display CGI


Results 61 - 80 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 5' -60.2 NC_004812.1 + 54423 0.66 0.725351
Target:  5'- cCGCCGGGuGUCGAugggcccgccgcGGGcccccgacGAcGGGGCCGa -3'
miRNA:   3'- -GCGGUCC-CAGCU------------CCU--------CUaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 77951 0.66 0.724394
Target:  5'- gGUCGGGGUggCGGGGgcgaagaGGGUGuccGGGCCGg -3'
miRNA:   3'- gCGGUCCCA--GCUCC-------UCUAU---CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 5330 0.66 0.71575
Target:  5'- cCGCCGGGGcgccgccCGGGGucGGcgGGGGCgCGg -3'
miRNA:   3'- -GCGGUCCCa------GCUCC--UCuaUCCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 30862 0.66 0.71575
Target:  5'- ---gGGGGggGAGGAGAgcGGGGCCGc -3'
miRNA:   3'- gcggUCCCagCUCCUCUa-UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 153680 0.66 0.71575
Target:  5'- cCGCCgAGGGUgaCGAGGAc--GGGGCgGg -3'
miRNA:   3'- -GCGG-UCCCA--GCUCCUcuaUCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 100057 0.66 0.71575
Target:  5'- aGCgGGGGUCacccucGGAGugugaucgGGGGCCGg -3'
miRNA:   3'- gCGgUCCCAGcu----CCUCua------UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 130838 0.66 0.71575
Target:  5'- cCGCCGGGGcgccgccCGGGGucGGcgGGGGCgCGg -3'
miRNA:   3'- -GCGGUCCCa------GCUCC--UCuaUCCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 156370 0.66 0.71575
Target:  5'- ---gGGGGggGAGGAGAgcGGGGCCGc -3'
miRNA:   3'- gcggUCCCagCUCCUCUa-UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 148007 0.66 0.71575
Target:  5'- gGCCgAGGG-CGAcGGAGAauguGGGCgGUg -3'
miRNA:   3'- gCGG-UCCCaGCU-CCUCUau--CCCGgCA- -5'
21480 5' -60.2 NC_004812.1 + 3323 0.66 0.71575
Target:  5'- gCGCCAGGccUCGGGGAaGAgcGGGUgGUc -3'
miRNA:   3'- -GCGGUCCc-AGCUCCU-CUauCCCGgCA- -5'
21480 5' -60.2 NC_004812.1 + 128831 0.66 0.71575
Target:  5'- gCGCCAGGccUCGGGGAaGAgcGGGUgGUc -3'
miRNA:   3'- -GCGGUCCc-AGCUCCU-CUauCCCGgCA- -5'
21480 5' -60.2 NC_004812.1 + 91079 0.66 0.71575
Target:  5'- aGaCCGGGGgCGAGGGGGggcgccaGGGGCgCGc -3'
miRNA:   3'- gC-GGUCCCaGCUCCUCUa------UCCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 68958 0.67 0.706082
Target:  5'- cCGCgAGGGUCGAGuGGGucGUGGuGGUCu- -3'
miRNA:   3'- -GCGgUCCCAGCUC-CUC--UAUC-CCGGca -5'
21480 5' -60.2 NC_004812.1 + 147836 0.67 0.706082
Target:  5'- gGCCGGaGUgGGGGGGGUGGcGGUgGUg -3'
miRNA:   3'- gCGGUCcCAgCUCCUCUAUC-CCGgCA- -5'
21480 5' -60.2 NC_004812.1 + 116935 0.67 0.706082
Target:  5'- gGCCGGaGUgGGGGGGGUGGcGGUgGUg -3'
miRNA:   3'- gCGGUCcCAgCUCCUCUAUC-CCGgCA- -5'
21480 5' -60.2 NC_004812.1 + 1427 0.67 0.706082
Target:  5'- gGCCGcGGG--GAGGGGccGGGGCCGc -3'
miRNA:   3'- gCGGU-CCCagCUCCUCuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 134127 0.67 0.706082
Target:  5'- gCGCCgauGGGGUCGGGGaAGAcUAcGGCCc- -3'
miRNA:   3'- -GCGG---UCCCAGCUCC-UCU-AUcCCGGca -5'
21480 5' -60.2 NC_004812.1 + 126935 0.67 0.706082
Target:  5'- gGCCGcGGG--GAGGGGccGGGGCCGc -3'
miRNA:   3'- gCGGU-CCCagCUCCUCuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 139809 0.67 0.705111
Target:  5'- gGCgGGGGUCGAGGuGGccaUGGucgccucGGCCGc -3'
miRNA:   3'- gCGgUCCCAGCUCCuCU---AUC-------CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 1934 0.67 0.700252
Target:  5'- gGCCGGGGcgcuccgcccgUCGGGGGGAcgggugcaucgucacUgaGGGGCUGg -3'
miRNA:   3'- gCGGUCCC-----------AGCUCCUCU---------------A--UCCCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.