miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 5' -60.2 NC_004812.1 + 200 0.68 0.647124
Target:  5'- gCGCCccGGaaacgCGGGGAGggGGGGCCc- -3'
miRNA:   3'- -GCGGucCCa----GCUCCUCuaUCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 724 0.69 0.539025
Target:  5'- gCGCCGGcgcGGUCGccggcGGGGGUGGGGgCGg -3'
miRNA:   3'- -GCGGUC---CCAGCu----CCUCUAUCCCgGCa -5'
21480 5' -60.2 NC_004812.1 + 820 0.66 0.734877
Target:  5'- gGCCgGGGGUCcuGGGGGUccggGGuGGCCGg -3'
miRNA:   3'- gCGG-UCCCAGcuCCUCUA----UC-CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 888 0.69 0.558377
Target:  5'- uCGCCgGGGGUCcuGGGGGUccGGGGUCGc -3'
miRNA:   3'- -GCGG-UCCCAGcuCCUCUA--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 940 0.69 0.558377
Target:  5'- uCGCCgGGGGUCcuGGGGGUccGGGGUCGc -3'
miRNA:   3'- -GCGG-UCCCAGcuCCUCUA--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 992 0.75 0.254359
Target:  5'- uCGCCGGGGUCcuGGGGGUccGGGGUCGc -3'
miRNA:   3'- -GCGGUCCCAGcuCCUCUA--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 1289 0.66 0.734877
Target:  5'- -cCCAGGGUCcccGGAGGcgGGGcGCCGa -3'
miRNA:   3'- gcGGUCCCAGcu-CCUCUa-UCC-CGGCa -5'
21480 5' -60.2 NC_004812.1 + 1427 0.67 0.706082
Target:  5'- gGCCGcGGG--GAGGGGccGGGGCCGc -3'
miRNA:   3'- gCGGU-CCCagCUCCUCuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 1934 0.67 0.700252
Target:  5'- gGCCGGGGcgcuccgcccgUCGGGGGGAcgggugcaucgucacUgaGGGGCUGg -3'
miRNA:   3'- gCGGUCCC-----------AGCUCCUCU---------------A--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 1971 0.71 0.464322
Target:  5'- gCGCCGGGGggaGGGGGGGaGGGGUgGc -3'
miRNA:   3'- -GCGGUCCCag-CUCCUCUaUCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 3322 0.71 0.464322
Target:  5'- aGCCAGGG--GAGGGGcccgaGGGGCCGc -3'
miRNA:   3'- gCGGUCCCagCUCCUCua---UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 3323 0.66 0.71575
Target:  5'- gCGCCAGGccUCGGGGAaGAgcGGGUgGUc -3'
miRNA:   3'- -GCGGUCCc-AGCUCCU-CUauCCCGgCA- -5'
21480 5' -60.2 NC_004812.1 + 3511 0.66 0.761999
Target:  5'- gGcCCGGGGcCGGcggccccGGGGGcGGGGCCGc -3'
miRNA:   3'- gC-GGUCCCaGCU-------CCUCUaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 4843 0.67 0.696355
Target:  5'- aGCCcccugcGGGGcCGGGGA---GGGGCCGc -3'
miRNA:   3'- gCGG------UCCCaGCUCCUcuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 5086 0.72 0.376819
Target:  5'- gGCCGGGGUCcggccggggaggcgGGGGAGucUGGGGuCCGg -3'
miRNA:   3'- gCGGUCCCAG--------------CUCCUCu-AUCCC-GGCa -5'
21480 5' -60.2 NC_004812.1 + 5330 0.66 0.71575
Target:  5'- cCGCCGGGGcgccgccCGGGGucGGcgGGGGCgCGg -3'
miRNA:   3'- -GCGGUCCCa------GCUCC--UCuaUCCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 5587 0.69 0.591688
Target:  5'- -aCCAGGGccaCGGGGGGGgcggggucccccagGGGGCCGg -3'
miRNA:   3'- gcGGUCCCa--GCUCCUCUa-------------UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 5653 0.7 0.482523
Target:  5'- uCGCCGGGcG-CGAGGGGAgcccgcaGGGGCaCGg -3'
miRNA:   3'- -GCGGUCC-CaGCUCCUCUa------UCCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 5717 0.67 0.696355
Target:  5'- gGCgGGGGUCugccgcGGGAGGaGGGcGCCGg -3'
miRNA:   3'- gCGgUCCCAGc-----UCCUCUaUCC-CGGCa -5'
21480 5' -60.2 NC_004812.1 + 5880 0.66 0.762919
Target:  5'- gGCCGGGGggcgCGGGcGcGGgcucaGGGGCCGc -3'
miRNA:   3'- gCGGUCCCa---GCUC-CuCUa----UCCCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.