miRNA display CGI


Results 21 - 40 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 5' -60.2 NC_004812.1 + 6002 0.74 0.312076
Target:  5'- gCGCCGGGGggCGAGGGGAagGGGGaCGc -3'
miRNA:   3'- -GCGGUCCCa-GCUCCUCUa-UCCCgGCa -5'
21480 5' -60.2 NC_004812.1 + 6044 0.66 0.734877
Target:  5'- gCGCCguAGGGcggCGAGGGGAaGGcGGCgGa -3'
miRNA:   3'- -GCGG--UCCCa--GCUCCUCUaUC-CCGgCa -5'
21480 5' -60.2 NC_004812.1 + 6076 0.7 0.482523
Target:  5'- gGCgaAGGGgggCGAGGGGAagGGGGUCGg -3'
miRNA:   3'- gCGg-UCCCa--GCUCCUCUa-UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 6132 0.75 0.254359
Target:  5'- uGCCGGGGaaggcgggCGAGGGGAagGGGGUCGg -3'
miRNA:   3'- gCGGUCCCa-------GCUCCUCUa-UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 6258 0.76 0.231655
Target:  5'- gCGCCcGcGGUCGGGGGGGagcUAGGGCCa- -3'
miRNA:   3'- -GCGGuC-CCAGCUCCUCU---AUCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 6521 0.66 0.762919
Target:  5'- -aCCAGGagcaGGGGGGGgcggGGGGCCGa -3'
miRNA:   3'- gcGGUCCcag-CUCCUCUa---UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 6647 0.67 0.676758
Target:  5'- gGagGGGGUgGGGGAGAUGGGGgaGa -3'
miRNA:   3'- gCggUCCCAgCUCCUCUAUCCCggCa -5'
21480 5' -60.2 NC_004812.1 + 6812 0.66 0.762919
Target:  5'- gCGCCGGGcGUCuGGGGcuGGGUggGGGGCgGc -3'
miRNA:   3'- -GCGGUCC-CAG-CUCC--UCUA--UCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 6935 0.67 0.657024
Target:  5'- gGCCGGGGUgGGGGGGAagcGGGGa--- -3'
miRNA:   3'- gCGGUCCCAgCUCCUCUa--UCCCggca -5'
21480 5' -60.2 NC_004812.1 + 7484 0.68 0.647124
Target:  5'- gGCgAGGGggaUGGGGGGGggacgguGGGCCGg -3'
miRNA:   3'- gCGgUCCCa--GCUCCUCUau-----CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 7545 0.69 0.548675
Target:  5'- gCGCggggaCGGGGgagcgCGGGGAGAcucUGGGGUCGg -3'
miRNA:   3'- -GCG-----GUCCCa----GCUCCUCU---AUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 7641 0.74 0.316959
Target:  5'- gGCCGGGGUCGGGGcGcgAagcugcgggcccgcGGGCCGg -3'
miRNA:   3'- gCGGUCCCAGCUCCuCuaU--------------CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 7945 0.7 0.519908
Target:  5'- gGCCGGGGggcgCGuccGGGG--GGGGCCGa -3'
miRNA:   3'- gCGGUCCCa---GCu--CCUCuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 8191 0.68 0.60749
Target:  5'- gGCCGGGGUCcGGccGAGAgcggccgGGGGCCc- -3'
miRNA:   3'- gCGGUCCCAGcUC--CUCUa------UCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 8247 0.69 0.558377
Target:  5'- gGCCGGGGguccgccccCGGGGGcgccgGGGGCCGg -3'
miRNA:   3'- gCGGUCCCa--------GCUCCUcua--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 8379 0.69 0.577919
Target:  5'- cCGCCGGGGccCGGGGuccgGGGGCgCGg -3'
miRNA:   3'- -GCGGUCCCa-GCUCCucuaUCCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 8477 0.66 0.753669
Target:  5'- aCGCCAGaGGU---GGAGAUcgAGcGGCCGg -3'
miRNA:   3'- -GCGGUC-CCAgcuCCUCUA--UC-CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 8633 0.67 0.696355
Target:  5'- aCGCgAGGGgcgGGGGAGcgGGcGGCCa- -3'
miRNA:   3'- -GCGgUCCCag-CUCCUCuaUC-CCGGca -5'
21480 5' -60.2 NC_004812.1 + 8838 0.67 0.676758
Target:  5'- aGCUacuacGGGGUUGuucccgggcGGGGGGUGGGGCgGg -3'
miRNA:   3'- gCGG-----UCCCAGC---------UCCUCUAUCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 10499 0.66 0.731076
Target:  5'- gGCuCGGGGUaGGGGAGAgaagccggaggcgGGGGCgGg -3'
miRNA:   3'- gCG-GUCCCAgCUCCUCUa------------UCCCGgCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.