miRNA display CGI


Results 41 - 60 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 5' -60.2 NC_004812.1 + 11305 0.7 0.510448
Target:  5'- cCGCgCGGGGcgcCGcGGGGcgGGGGCCGg -3'
miRNA:   3'- -GCG-GUCCCa--GCuCCUCuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 12103 0.67 0.685597
Target:  5'- gGCCAuguucccguguccGGcGUCGGGGGGGUugGGGGCgCGc -3'
miRNA:   3'- gCGGU-------------CC-CAGCUCCUCUA--UCCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 12816 0.66 0.734877
Target:  5'- gGCCGauGGGgagUGGGcGGGGaAGGGCCGa -3'
miRNA:   3'- gCGGU--CCCa--GCUC-CUCUaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 13012 0.67 0.696355
Target:  5'- cCGCCGGaGG-CGGccugaucgccGGGGGUcgcGGGGCCGg -3'
miRNA:   3'- -GCGGUC-CCaGCU----------CCUCUA---UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 13322 0.68 0.626309
Target:  5'- gCGCCgGGGGUCGGGGGugcggcGGUcccuuccgcgccgGGGGUCGg -3'
miRNA:   3'- -GCGG-UCCCAGCUCCU------CUA-------------UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 13388 0.69 0.558377
Target:  5'- gCGCCgGGGGUCGGGGgcgcggcggGGGUGacGGCCGg -3'
miRNA:   3'- -GCGG-UCCCAGCUCC---------UCUAUc-CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 16506 0.66 0.732028
Target:  5'- gGCCGGGGggcgcgggggCGAugcgcucacgcgugGGAGGUGGGcaGCCGg -3'
miRNA:   3'- gCGGUCCCa---------GCU--------------CCUCUAUCC--CGGCa -5'
21480 5' -60.2 NC_004812.1 + 16748 0.72 0.403636
Target:  5'- gGCCuGGGgcucagUCGGGGGGcgcgGGGGCCGg -3'
miRNA:   3'- gCGGuCCC------AGCUCCUCua--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 16826 0.75 0.254359
Target:  5'- gCGCCgcGGGGUCG-GGGGGUAGGGgUGg -3'
miRNA:   3'- -GCGG--UCCCAGCuCCUCUAUCCCgGCa -5'
21480 5' -60.2 NC_004812.1 + 17154 0.75 0.262726
Target:  5'- gGCCGGGGggagucguggcgucCGAGGGGAcAGGGCCa- -3'
miRNA:   3'- gCGGUCCCa-------------GCUCCUCUaUCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 17413 0.67 0.696355
Target:  5'- gGCgGGGGUgGuggugggggcGGGGGUGGcGGCCGUc -3'
miRNA:   3'- gCGgUCCCAgCu---------CCUCUAUC-CCGGCA- -5'
21480 5' -60.2 NC_004812.1 + 17932 0.7 0.510448
Target:  5'- gGCCc-GGUCGGGGGGGgagagGGGGUCGc -3'
miRNA:   3'- gCGGucCCAGCUCCUCUa----UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 19654 0.69 0.587748
Target:  5'- cCGCCAGGG-CGAGGGGGUccguGGCg-- -3'
miRNA:   3'- -GCGGUCCCaGCUCCUCUAuc--CCGgca -5'
21480 5' -60.2 NC_004812.1 + 19669 0.71 0.455357
Target:  5'- cCGCCGGGGgccgCGGGGAcg-AGGGCgGc -3'
miRNA:   3'- -GCGGUCCCa---GCUCCUcuaUCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 19879 0.68 0.623335
Target:  5'- gCGUCGuGGGcgCGGGGGGGgucgugggugcugGGGGCCGg -3'
miRNA:   3'- -GCGGU-CCCa-GCUCCUCUa------------UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 20664 0.68 0.647124
Target:  5'- cCGCguGGGagagCGAGGAGGUGGcggacGCCGc -3'
miRNA:   3'- -GCGguCCCa---GCUCCUCUAUCc----CGGCa -5'
21480 5' -60.2 NC_004812.1 + 21964 0.66 0.743379
Target:  5'- aCGCCGuGGUgcucgcgCGGGGAGGggggcAGGGCCa- -3'
miRNA:   3'- -GCGGUcCCA-------GCUCCUCUa----UCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 24135 0.69 0.577919
Target:  5'- gGCgGGGGUgGGGGaAGggGGGGCgCGa -3'
miRNA:   3'- gCGgUCCCAgCUCC-UCuaUCCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 25333 0.72 0.379207
Target:  5'- cCGCgAGcGGaCGGGGAGAggagaGGGGCCGg -3'
miRNA:   3'- -GCGgUC-CCaGCUCCUCUa----UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 26333 0.69 0.587748
Target:  5'- cCGCUcgGGGGUCccGGGGGUGGccGGCCGa -3'
miRNA:   3'- -GCGG--UCCCAGcuCCUCUAUC--CCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.