miRNA display CGI


Results 61 - 80 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 5' -60.2 NC_004812.1 + 26995 0.66 0.762919
Target:  5'- cCGCCGGcGcCGGGGAGGacggccccgccGGGGCCGc -3'
miRNA:   3'- -GCGGUCcCaGCUCCUCUa----------UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 27709 0.68 0.61739
Target:  5'- -aCCAGGGacaggacggaCGAGGGGGggcggGGGGCCGc -3'
miRNA:   3'- gcGGUCCCa---------GCUCCUCUa----UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 27790 0.72 0.403636
Target:  5'- cCGCCGGGGgaGAGGGc--GGGGCCGg -3'
miRNA:   3'- -GCGGUCCCagCUCCUcuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 27908 0.68 0.647124
Target:  5'- aGCCc-GGUCGGGGAGAccGGGCg-- -3'
miRNA:   3'- gCGGucCCAGCUCCUCUauCCCGgca -5'
21480 5' -60.2 NC_004812.1 + 29234 0.75 0.272562
Target:  5'- gGCgGGGGUCGcGGAGGagcGGGCCGg -3'
miRNA:   3'- gCGgUCCCAGCuCCUCUau-CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 29441 0.66 0.762919
Target:  5'- aCGCgGGGGgggGGGGAGGggggacgggcGGGCCGc -3'
miRNA:   3'- -GCGgUCCCag-CUCCUCUau--------CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 29800 0.71 0.446485
Target:  5'- gGCCcgGGGGUCGGcgccccgccuccGGGGAcccugGGGGCCGg -3'
miRNA:   3'- gCGG--UCCCAGCU------------CCUCUa----UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 30371 0.71 0.437712
Target:  5'- gCGgCGGGGgaGGGGAGGggcGGGGCCGg -3'
miRNA:   3'- -GCgGUCCCagCUCCUCUa--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 30399 0.69 0.568127
Target:  5'- gCGCCcGGGcugccgcgcCGAGGAGGccGGGCCGc -3'
miRNA:   3'- -GCGGuCCCa--------GCUCCUCUauCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 30431 0.68 0.637214
Target:  5'- gGUCAGGG-CGcGGAGcgagGGGGCCa- -3'
miRNA:   3'- gCGGUCCCaGCuCCUCua--UCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 30502 0.67 0.676758
Target:  5'- gGCgCGGGG--GAGGGGAcgcccGGGGCCGg -3'
miRNA:   3'- gCG-GUCCCagCUCCUCUa----UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 30671 0.72 0.420466
Target:  5'- gGCCgcgcgaggaaGGGGagGGGGGGAgGGGGCCGc -3'
miRNA:   3'- gCGG----------UCCCagCUCCUCUaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 30811 0.67 0.676758
Target:  5'- gGCgGGGGaCG-GGAG--GGGGCCGa -3'
miRNA:   3'- gCGgUCCCaGCuCCUCuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 30862 0.66 0.71575
Target:  5'- ---gGGGGggGAGGAGAgcGGGGCCGc -3'
miRNA:   3'- gcggUCCCagCUCCUCUa-UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 31101 0.68 0.647124
Target:  5'- gCGCCccGGaaacgCGGGGAGggGGGGCCc- -3'
miRNA:   3'- -GCGGucCCa----GCUCCUCuaUCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 31625 0.69 0.539025
Target:  5'- gCGCCGGcgcGGUCGccggcGGGGGUGGGGgCGg -3'
miRNA:   3'- -GCGGUC---CCAGCu----CCUCUAUCCCgGCa -5'
21480 5' -60.2 NC_004812.1 + 31721 0.66 0.734877
Target:  5'- gGCCgGGGGUCcuGGGGGUccggGGuGGCCGg -3'
miRNA:   3'- gCGG-UCCCAGcuCCUCUA----UC-CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 31789 0.69 0.558377
Target:  5'- uCGCCgGGGGUCcuGGGGGUccGGGGUCGc -3'
miRNA:   3'- -GCGG-UCCCAGcuCCUCUA--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 31841 0.69 0.558377
Target:  5'- uCGCCgGGGGUCcuGGGGGUccGGGGUCGc -3'
miRNA:   3'- -GCGG-UCCCAGcuCCUCUA--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 31893 0.69 0.558377
Target:  5'- uCGCCgGGGGUCcuGGGGGUccGGGGUCGc -3'
miRNA:   3'- -GCGG-UCCCAGcuCCUCUA--UCCCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.