miRNA display CGI


Results 81 - 100 of 267 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 5' -60.2 NC_004812.1 + 32289 0.68 0.641179
Target:  5'- -cCCGGGGcCGugagcugcuccucggGGGAGAUGGGGgCGUc -3'
miRNA:   3'- gcGGUCCCaGC---------------UCCUCUAUCCCgGCA- -5'
21480 5' -60.2 NC_004812.1 + 32835 0.67 0.700252
Target:  5'- gGCCGGGGcgcuccgcccgUCGGGGGGAcgggugcaucgucacUgaGGGGCUGg -3'
miRNA:   3'- gCGGUCCC-----------AGCUCCUCU---------------A--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 34223 0.71 0.464322
Target:  5'- aGCCAGGG--GAGGGGcccgaGGGGCCGc -3'
miRNA:   3'- gCGGUCCCagCUCCUCua---UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 35660 0.68 0.637214
Target:  5'- gCGCgGGGGUCGGGGGcucuGUGGcGCCGc -3'
miRNA:   3'- -GCGgUCCCAGCUCCUc---UAUCcCGGCa -5'
21480 5' -60.2 NC_004812.1 + 35744 0.67 0.696355
Target:  5'- aGCCcccugcGGGGcCGGGGA---GGGGCCGc -3'
miRNA:   3'- gCGG------UCCCaGCUCCUcuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 35856 0.66 0.762919
Target:  5'- aGCgCGGGGUCGcuggcgcaggcgGGGGGGUA-GGCCu- -3'
miRNA:   3'- gCG-GUCCCAGC------------UCCUCUAUcCCGGca -5'
21480 5' -60.2 NC_004812.1 + 35987 0.72 0.376819
Target:  5'- gGCCGGGGUCcggccggggaggcgGGGGAGucUGGGGuCCGg -3'
miRNA:   3'- gCGGUCCCAG--------------CUCCUCu-AUCCC-GGCa -5'
21480 5' -60.2 NC_004812.1 + 36451 0.66 0.734877
Target:  5'- gGCCGcguuGUCGAGGAGcgggGGGGCCc- -3'
miRNA:   3'- gCGGUcc--CAGCUCCUCua--UCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 36488 0.69 0.591688
Target:  5'- -aCCAGGGccaCGGGGGGGgcggggucccccagGGGGCCGg -3'
miRNA:   3'- gcGGUCCCa--GCUCCUCUa-------------UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 36554 0.7 0.482523
Target:  5'- uCGCCGGGcG-CGAGGGGAgcccgcaGGGGCaCGg -3'
miRNA:   3'- -GCGGUCC-CaGCUCCUCUa------UCCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 36618 0.67 0.696355
Target:  5'- gGCgGGGGUCugccgcGGGAGGaGGGcGCCGg -3'
miRNA:   3'- gCGgUCCCAGc-----UCCUCUaUCC-CGGCa -5'
21480 5' -60.2 NC_004812.1 + 36781 0.66 0.762919
Target:  5'- gGCCGGGGggcgCGGGcGcGGgcucaGGGGCCGc -3'
miRNA:   3'- gCGGUCCCa---GCUC-CuCUa----UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 36893 0.76 0.226252
Target:  5'- gCGCCgAGGGUCGGGGGGAcgagGGGGaCGg -3'
miRNA:   3'- -GCGG-UCCCAGCUCCUCUa---UCCCgGCa -5'
21480 5' -60.2 NC_004812.1 + 36904 0.75 0.260313
Target:  5'- gCGCCGGGGggCGAGGGGAaGGGGaCGc -3'
miRNA:   3'- -GCGGUCCCa-GCUCCUCUaUCCCgGCa -5'
21480 5' -60.2 NC_004812.1 + 36945 0.66 0.734877
Target:  5'- gCGCCguAGGGcggCGAGGGGAaGGcGGCgGa -3'
miRNA:   3'- -GCGG--UCCCa--GCUCCUCUaUC-CCGgCa -5'
21480 5' -60.2 NC_004812.1 + 36977 0.7 0.482523
Target:  5'- gGCgaAGGGgggCGAGGGGAagGGGGUCGg -3'
miRNA:   3'- gCGg-UCCCa--GCUCCUCUa-UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 37033 0.75 0.254359
Target:  5'- uGCCGGGGaaggcgggCGAGGGGAagGGGGUCGg -3'
miRNA:   3'- gCGGUCCCa-------GCUCCUCUa-UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 37159 0.76 0.231655
Target:  5'- gCGCCcGcGGUCGGGGGGGagcUAGGGCCa- -3'
miRNA:   3'- -GCGGuC-CCAGCUCCUCU---AUCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 37422 0.66 0.762919
Target:  5'- -aCCAGGagcaGGGGGGGgcggGGGGCCGa -3'
miRNA:   3'- gcGGUCCcag-CUCCUCUa---UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 37548 0.67 0.676758
Target:  5'- gGagGGGGUgGGGGAGAUGGGGgaGa -3'
miRNA:   3'- gCggUCCCAgCUCCUCUAUCCCggCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.