Results 101 - 120 of 267 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 37713 | 0.66 | 0.762919 |
Target: 5'- gCGCCGGGcGUCuGGGGcuGGGUggGGGGCgGc -3' miRNA: 3'- -GCGGUCC-CAG-CUCC--UCUA--UCCCGgCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 37836 | 0.67 | 0.657024 |
Target: 5'- gGCCGGGGUgGGGGGGAagcGGGGa--- -3' miRNA: 3'- gCGGUCCCAgCUCCUCUa--UCCCggca -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 38169 | 0.66 | 0.734877 |
Target: 5'- gCGCCGGGGccCGcGGGAGGgacccgcGGGCCc- -3' miRNA: 3'- -GCGGUCCCa-GC-UCCUCUau-----CCCGGca -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 38385 | 0.68 | 0.647124 |
Target: 5'- gGCgAGGGggaUGGGGGGGggacgguGGGCCGg -3' miRNA: 3'- gCGgUCCCa--GCUCCUCUau-----CCCGGCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 38446 | 0.69 | 0.548675 |
Target: 5'- gCGCggggaCGGGGgagcgCGGGGAGAcucUGGGGUCGg -3' miRNA: 3'- -GCG-----GUCCCa----GCUCCUCU---AUCCCGGCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 38542 | 0.74 | 0.316959 |
Target: 5'- gGCCGGGGUCGGGGcGcgAagcugcgggcccgcGGGCCGg -3' miRNA: 3'- gCGGUCCCAGCUCCuCuaU--------------CCCGGCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 38678 | 0.69 | 0.539025 |
Target: 5'- gGUCAGGuccaucgcaccGaCGAGGGGGUAGGGCaCGUu -3' miRNA: 3'- gCGGUCC-----------CaGCUCCUCUAUCCCG-GCA- -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 38846 | 0.7 | 0.519908 |
Target: 5'- gGCCGGGGggcgCGuccGGGG--GGGGCCGa -3' miRNA: 3'- gCGGUCCCa---GCu--CCUCuaUCCCGGCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 39092 | 0.68 | 0.60749 |
Target: 5'- gGCCGGGGUCcGGccGAGAgcggccgGGGGCCc- -3' miRNA: 3'- gCGGUCCCAGcUC--CUCUa------UCCCGGca -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 39148 | 0.69 | 0.558377 |
Target: 5'- gGCCGGGGguccgccccCGGGGGcgccgGGGGCCGg -3' miRNA: 3'- gCGGUCCCa--------GCUCCUcua--UCCCGGCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 39280 | 0.69 | 0.577919 |
Target: 5'- cCGCCGGGGccCGGGGuccgGGGGCgCGg -3' miRNA: 3'- -GCGGUCCCa-GCUCCucuaUCCCG-GCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 39378 | 0.66 | 0.753669 |
Target: 5'- aCGCCAGaGGU---GGAGAUcgAGcGGCCGg -3' miRNA: 3'- -GCGGUC-CCAgcuCCUCUA--UC-CCGGCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 39534 | 0.67 | 0.696355 |
Target: 5'- aCGCgAGGGgcgGGGGAGcgGGcGGCCa- -3' miRNA: 3'- -GCGgUCCCag-CUCCUCuaUC-CCGGca -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 39739 | 0.67 | 0.676758 |
Target: 5'- aGCUacuacGGGGUUGuucccgggcGGGGGGUGGGGCgGg -3' miRNA: 3'- gCGG-----UCCCAGC---------UCCUCUAUCCCGgCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 40530 | 0.66 | 0.762919 |
Target: 5'- gGCgCGGGG--GAGGGGAgGGGGCgCGg -3' miRNA: 3'- gCG-GUCCCagCUCCUCUaUCCCG-GCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 40569 | 0.66 | 0.762919 |
Target: 5'- gGCgCGGGG--GAGGGGAgGGGGCgCGg -3' miRNA: 3'- gCG-GUCCCagCUCCUCUaUCCCG-GCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 40707 | 0.66 | 0.762919 |
Target: 5'- gGCgCGGGG--GAGGGGAgGGGGCgCGg -3' miRNA: 3'- gCG-GUCCCagCUCCUCUaUCCCG-GCa -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 43001 | 0.66 | 0.753669 |
Target: 5'- uGCgGGGG-CGGuGGGGGUgcgGGGGCgGUg -3' miRNA: 3'- gCGgUCCCaGCU-CCUCUA---UCCCGgCA- -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 43035 | 0.66 | 0.753669 |
Target: 5'- uGCgGGGG-CGGuGGGGGUgcgGGGGCgGUg -3' miRNA: 3'- gCGgUCCCaGCU-CCUCUA---UCCCGgCA- -5' |
|||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 44169 | 0.67 | 0.68069 |
Target: 5'- gCGCuCGGGGgccgagccggucugCGGcGGGGGUGGGGCuCGg -3' miRNA: 3'- -GCG-GUCCCa-------------GCU-CCUCUAUCCCG-GCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home