miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 5' -60.2 NC_004812.1 + 156370 0.66 0.71575
Target:  5'- ---gGGGGggGAGGAGAgcGGGGCCGc -3'
miRNA:   3'- gcggUCCCagCUCCUCUa-UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 156319 0.67 0.676758
Target:  5'- gGCgGGGGaCG-GGAG--GGGGCCGa -3'
miRNA:   3'- gCGgUCCCaGCuCCUCuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 156179 0.72 0.420466
Target:  5'- gGCCgcgcgaggaaGGGGagGGGGGGAgGGGGCCGc -3'
miRNA:   3'- gCGG----------UCCCagCUCCUCUaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 156065 0.72 0.395383
Target:  5'- gCGCCGGGG-CG-GGAGGcgggAGGGCCc- -3'
miRNA:   3'- -GCGGUCCCaGCuCCUCUa---UCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 156010 0.67 0.676758
Target:  5'- gGCgCGGGG--GAGGGGAcgcccGGGGCCGg -3'
miRNA:   3'- gCG-GUCCCagCUCCUCUa----UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 155907 0.69 0.568127
Target:  5'- gCGCCcGGGcugccgcgcCGAGGAGGccGGGCCGc -3'
miRNA:   3'- -GCGGuCCCa--------GCUCCUCUauCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 155879 0.71 0.437712
Target:  5'- gCGgCGGGGgaGGGGAGGggcGGGGCCGg -3'
miRNA:   3'- -GCgGUCCCagCUCCUCUa--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 155564 0.66 0.753669
Target:  5'- gGCCGGGcagGAGGAGAccgcGGGGuuGUa -3'
miRNA:   3'- gCGGUCCcagCUCCUCUa---UCCCggCA- -5'
21480 5' -60.2 NC_004812.1 + 155521 0.68 0.637214
Target:  5'- cCGCCGGGcagGAGGAGAccGcGGCCGg -3'
miRNA:   3'- -GCGGUCCcagCUCCUCUauC-CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 155308 0.71 0.446485
Target:  5'- gGCCcgGGGGUCGGcgccccgccuccGGGGAcccugGGGGCCGg -3'
miRNA:   3'- gCGG--UCCCAGCU------------CCUCUa----UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 155151 0.71 0.446485
Target:  5'- gGCC-GGGUCGAGGGcGGUcgugGGGGCgGg -3'
miRNA:   3'- gCGGuCCCAGCUCCU-CUA----UCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 154949 0.66 0.762919
Target:  5'- aCGCgGGGGgggGGGGAGGggggacgggcGGGCCGc -3'
miRNA:   3'- -GCGgUCCCag-CUCCUCUau--------CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 154742 0.75 0.272562
Target:  5'- gGCgGGGGUCGcGGAGGagcGGGCCGg -3'
miRNA:   3'- gCGgUCCCAGCuCCUCUau-CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 153782 0.67 0.657024
Target:  5'- uGCgGGGGUCGuugaccacGGGGAUGGuGCUGUa -3'
miRNA:   3'- gCGgUCCCAGCu-------CCUCUAUCcCGGCA- -5'
21480 5' -60.2 NC_004812.1 + 153680 0.66 0.71575
Target:  5'- cCGCCgAGGGUgaCGAGGAc--GGGGCgGg -3'
miRNA:   3'- -GCGG-UCCCA--GCUCCUcuaUCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 153443 0.66 0.744319
Target:  5'- aGUCGGGGgCGGGGGGcgcgggggGGGGCgGa -3'
miRNA:   3'- gCGGUCCCaGCUCCUCua------UCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 153024 0.67 0.686578
Target:  5'- gGCCAGGGccugggCGAGGAcGGccuGGGCgCGg -3'
miRNA:   3'- gCGGUCCCa-----GCUCCU-CUau-CCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 152995 0.68 0.60749
Target:  5'- gCGCCGGGG-CGGGccuGGGUcAGGGCCu- -3'
miRNA:   3'- -GCGGUCCCaGCUCc--UCUA-UCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 152776 0.66 0.762919
Target:  5'- gCGCagaGGGG-CGGGGccugGGGcGGGGCCGc -3'
miRNA:   3'- -GCGg--UCCCaGCUCC----UCUaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 152504 0.66 0.762919
Target:  5'- cCGCCGGcGcCGGGGAGGacggccccgccGGGGCCGc -3'
miRNA:   3'- -GCGGUCcCaGCUCCUCUa----------UCCCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.