Results 41 - 60 of 267 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21480 | 5' | -60.2 | NC_004812.1 | + | 137979 | 0.69 | 0.577919 |
Target: 5'- gGgCGGGGUCGGGGGGggGGGGg--- -3' miRNA: 3'- gCgGUCCCAGCUCCUCuaUCCCggca -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 134127 | 0.67 | 0.706082 |
Target: 5'- gCGCCgauGGGGUCGGGGaAGAcUAcGGCCc- -3' miRNA: 3'- -GCGG---UCCCAGCUCC-UCU-AUcCCGGca -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 130838 | 0.66 | 0.71575 |
Target: 5'- cCGCCGGGGcgccgccCGGGGucGGcgGGGGCgCGg -3' miRNA: 3'- -GCGGUCCCa------GCUCC--UCuaUCCCG-GCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 129019 | 0.66 | 0.761999 |
Target: 5'- gGcCCGGGGcCGGcggccccGGGGGcGGGGCCGc -3' miRNA: 3'- gC-GGUCCCaGCU-------CCUCUaUCCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 128831 | 0.66 | 0.71575 |
Target: 5'- gCGCCAGGccUCGGGGAaGAgcGGGUgGUc -3' miRNA: 3'- -GCGGUCCc-AGCUCCU-CUauCCCGgCA- -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 127479 | 0.72 | 0.387239 |
Target: 5'- gCGCCGGGGggaGGGGGGGaGGGGUgGg -3' miRNA: 3'- -GCGGUCCCag-CUCCUCUaUCCCGgCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 126935 | 0.67 | 0.706082 |
Target: 5'- gGCCGcGGG--GAGGGGccGGGGCCGc -3' miRNA: 3'- gCGGU-CCCagCUCCUCuaUCCCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 126797 | 0.66 | 0.734877 |
Target: 5'- -cCCAGGGUCcccGGAGGcgGGGcGCCGa -3' miRNA: 3'- gcGGUCCCAGcu-CCUCUa-UCC-CGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 125164 | 0.72 | 0.395383 |
Target: 5'- gCGCCGGGG-CG-GGAGGcgggAGGGCCc- -3' miRNA: 3'- -GCGGUCCCaGCuCCUCUa---UCCCGGca -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 124663 | 0.66 | 0.753669 |
Target: 5'- gGCCGGGcagGAGGAGAccgcGGGGuuGUa -3' miRNA: 3'- gCGGUCCcagCUCCUCUa---UCCCggCA- -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 124620 | 0.68 | 0.637214 |
Target: 5'- cCGCCGGGcagGAGGAGAccGcGGCCGg -3' miRNA: 3'- -GCGGUCCcagCUCCUCUauC-CCGGCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 124382 | 0.66 | 0.738664 |
Target: 5'- gCGCgAGGa-CGAGGAGAUccucgcgcuggugcaGcGGGCCGUg -3' miRNA: 3'- -GCGgUCCcaGCUCCUCUA---------------U-CCCGGCA- -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 124250 | 0.71 | 0.446485 |
Target: 5'- gGCC-GGGUCGAGGGcGGUcgugGGGGCgGg -3' miRNA: 3'- gCGGuCCCAGCUCCU-CUA----UCCCGgCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 123522 | 0.69 | 0.558377 |
Target: 5'- gCGCCGGGaGcgcggCGGGGAGGagAGGGCgGg -3' miRNA: 3'- -GCGGUCC-Ca----GCUCCUCUa-UCCCGgCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 122881 | 0.67 | 0.657024 |
Target: 5'- uGCgGGGGUCGuugaccacGGGGAUGGuGCUGUa -3' miRNA: 3'- gCGgUCCCAGCu-------CCUCUAUCcCGGCA- -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 122778 | 0.66 | 0.753669 |
Target: 5'- cCGCCgAGGGUgacCGAGGAc--GGGGCgGg -3' miRNA: 3'- -GCGG-UCCCA---GCUCCUcuaUCCCGgCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 122542 | 0.66 | 0.744319 |
Target: 5'- aGUCGGGGgCGGGGGGcgcgggggGGGGCgGa -3' miRNA: 3'- gCGGUCCCaGCUCCUCua------UCCCGgCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 122123 | 0.67 | 0.686578 |
Target: 5'- gGCCAGGGccugggCGAGGAcGGccuGGGCgCGg -3' miRNA: 3'- gCGGUCCCa-----GCUCCU-CUau-CCCG-GCa -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 122094 | 0.68 | 0.60749 |
Target: 5'- gCGCCGGGG-CGGGccuGGGUcAGGGCCu- -3' miRNA: 3'- -GCGGUCCCaGCUCc--UCUA-UCCCGGca -5' |
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21480 | 5' | -60.2 | NC_004812.1 | + | 121875 | 0.66 | 0.762919 |
Target: 5'- gCGCagaGGGG-CGGGGccugGGGcGGGGCCGc -3' miRNA: 3'- -GCGg--UCCCaGCUCC----UCUaUCCCGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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