miRNA display CGI


Results 61 - 80 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 5' -60.2 NC_004812.1 + 121765 0.66 0.744319
Target:  5'- gGCCuccGGGaggCGGGGgcAGcgAGGGCCGc -3'
miRNA:   3'- gCGGu--CCCa--GCUCC--UCuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 121258 0.68 0.636223
Target:  5'- uCGCCGGGGUacucgggCGGGGAcacgcGGcccGGGGCCGc -3'
miRNA:   3'- -GCGGUCCCA-------GCUCCU-----CUa--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 121115 0.66 0.734877
Target:  5'- aGCCccGGGUCGGGGgcGGGUcggcGGGCCc- -3'
miRNA:   3'- gCGGu-CCCAGCUCC--UCUAu---CCCGGca -5'
21480 5' -60.2 NC_004812.1 + 117665 0.66 0.753669
Target:  5'- gGCCGGGcGcCGGGGGGugccggcGGaGGCCGg -3'
miRNA:   3'- gCGGUCC-CaGCUCCUCua-----UC-CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 117612 0.69 0.558377
Target:  5'- gGCCGGGGgagGGGGGGcgGcgcGGGCCGc -3'
miRNA:   3'- gCGGUCCCag-CUCCUCuaU---CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 116935 0.67 0.706082
Target:  5'- gGCCGGaGUgGGGGGGGUGGcGGUgGUg -3'
miRNA:   3'- gCGGUCcCAgCUCCUCUAUC-CCGgCA- -5'
21480 5' -60.2 NC_004812.1 + 114993 0.69 0.539025
Target:  5'- aCGUCAGGGUgGAGGAGGcAGacGCUGUc -3'
miRNA:   3'- -GCGGUCCCAgCUCCUCUaUCc-CGGCA- -5'
21480 5' -60.2 NC_004812.1 + 113786 0.69 0.576938
Target:  5'- gCGCCAGa--CGAcGGAGAUagaguacAGGGCCGUg -3'
miRNA:   3'- -GCGGUCccaGCU-CCUCUA-------UCCCGGCA- -5'
21480 5' -60.2 NC_004812.1 + 113160 0.68 0.6273
Target:  5'- gCGCgAGGGUCGGcGGA----GGGCCGc -3'
miRNA:   3'- -GCGgUCCCAGCU-CCUcuauCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 111967 0.8 0.128909
Target:  5'- cCGCCGGGGUC--GGAGAaGGGGCCGc -3'
miRNA:   3'- -GCGGUCCCAGcuCCUCUaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 108915 0.66 0.748071
Target:  5'- gCGCCcGGGUCGGGuaaucgcccgGGGGUCGUg -3'
miRNA:   3'- -GCGGuCCCAGCUCcucua-----UCCCGGCA- -5'
21480 5' -60.2 NC_004812.1 + 107360 0.68 0.597607
Target:  5'- cCGUUGGGGgCGGGGGGAU--GGCCGg -3'
miRNA:   3'- -GCGGUCCCaGCUCCUCUAucCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 106579 0.69 0.539025
Target:  5'- uCGCCAGGGggcccgCGGGGGGG-AGcGCCGc -3'
miRNA:   3'- -GCGGUCCCa-----GCUCCUCUaUCcCGGCa -5'
21480 5' -60.2 NC_004812.1 + 106554 0.71 0.464322
Target:  5'- aCGCCGGGGagcugaggGAGGAGGcgcccGGGCCGg -3'
miRNA:   3'- -GCGGUCCCag------CUCCUCUau---CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 105798 0.7 0.510448
Target:  5'- uCGCCGGGGggCuuGGGGGUGGGGgcuCCGg -3'
miRNA:   3'- -GCGGUCCCa-GcuCCUCUAUCCC---GGCa -5'
21480 5' -60.2 NC_004812.1 + 105686 0.71 0.464322
Target:  5'- aCGCCGGGGcccCGaAGGcGGGUggcGGGGCCGg -3'
miRNA:   3'- -GCGGUCCCa--GC-UCC-UCUA---UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 105649 0.74 0.298439
Target:  5'- aCGCCGGGGUacaccccggCGuGGuGGUGGGGCgCGUa -3'
miRNA:   3'- -GCGGUCCCA---------GCuCCuCUAUCCCG-GCA- -5'
21480 5' -60.2 NC_004812.1 + 104777 0.69 0.548675
Target:  5'- aCGCgGgGGGUCcAGGGGccGUAGGGCUGg -3'
miRNA:   3'- -GCGgU-CCCAGcUCCUC--UAUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 102944 0.72 0.411998
Target:  5'- cCGCgGGGGUggCGGGGGGGcgucGGGGUCGUa -3'
miRNA:   3'- -GCGgUCCCA--GCUCCUCUa---UCCCGGCA- -5'
21480 5' -60.2 NC_004812.1 + 102357 0.68 0.61739
Target:  5'- uGCgAcGGGUCGAGGGGGgcuuuaUAGGacGCCGg -3'
miRNA:   3'- gCGgU-CCCAGCUCCUCU------AUCC--CGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.