miRNA display CGI


Results 81 - 100 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 5' -60.2 NC_004812.1 + 100845 0.75 0.254359
Target:  5'- aCGCCGGGGagggCGAGGAc--GGGGCCGc -3'
miRNA:   3'- -GCGGUCCCa---GCUCCUcuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 100382 0.67 0.696355
Target:  5'- cCGCCGGGGggcgCGAGGccacc-GGCCGg -3'
miRNA:   3'- -GCGGUCCCa---GCUCCucuaucCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 100057 0.66 0.71575
Target:  5'- aGCgGGGGUCacccucGGAGugugaucgGGGGCCGg -3'
miRNA:   3'- gCGgUCCCAGcu----CCUCua------UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 99224 0.7 0.501062
Target:  5'- uCGCguGGGgcagCGGGGAGGUGaagcGGGCgGUc -3'
miRNA:   3'- -GCGguCCCa---GCUCCUCUAU----CCCGgCA- -5'
21480 5' -60.2 NC_004812.1 + 99221 0.73 0.340012
Target:  5'- uGCCGGGcgaacgcGUCGgcGGGGGcgGGGGCCGUc -3'
miRNA:   3'- gCGGUCC-------CAGC--UCCUCuaUCCCGGCA- -5'
21480 5' -60.2 NC_004812.1 + 98668 0.68 0.637214
Target:  5'- aCGCgGGGGUCGAGccGGGgcGGGCgCGg -3'
miRNA:   3'- -GCGgUCCCAGCUCc-UCUauCCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 97166 0.73 0.36659
Target:  5'- uCGCCGGGGUCGucguGGGGGUcgucgucguccuggcGGGGCUc- -3'
miRNA:   3'- -GCGGUCCCAGCu---CCUCUA---------------UCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 96304 0.65 0.768417
Target:  5'- gGCCAGGGcaaggcccccaaGGGGGGGcgcgacggcGGGGCCGg -3'
miRNA:   3'- gCGGUCCCag----------CUCCUCUa--------UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 93486 0.69 0.587748
Target:  5'- -cCCGGGGgcCGAGGAGGgcggagAGcGGCCGg -3'
miRNA:   3'- gcGGUCCCa-GCUCCUCUa-----UC-CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 92906 0.67 0.696355
Target:  5'- gCGUguGGGUCGAGGAucccgaggcgGAggcgGGGGCg-- -3'
miRNA:   3'- -GCGguCCCAGCUCCU----------CUa---UCCCGgca -5'
21480 5' -60.2 NC_004812.1 + 91146 0.67 0.696355
Target:  5'- gGUCGGGGaCGGGcGGuccgGGGGCCGg -3'
miRNA:   3'- gCGGUCCCaGCUCcUCua--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 91118 0.76 0.237166
Target:  5'- gGCCguGGGGUCGcuuGGGGGcGGGGCCGg -3'
miRNA:   3'- gCGG--UCCCAGCu--CCUCUaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 91079 0.66 0.71575
Target:  5'- aGaCCGGGGgCGAGGGGGggcgccaGGGGCgCGc -3'
miRNA:   3'- gC-GGUCCCaGCUCCUCUa------UCCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 90003 0.66 0.762919
Target:  5'- gGCCuGGG-CGuGGAGcgGcccgcGGGCCGg -3'
miRNA:   3'- gCGGuCCCaGCuCCUCuaU-----CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 88942 0.74 0.312076
Target:  5'- cCGCCGGuGG-CGAGGAGGgcGcGGCCGg -3'
miRNA:   3'- -GCGGUC-CCaGCUCCUCUauC-CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 87568 0.66 0.761999
Target:  5'- aGCgCAGGGgCGGguuguuuGGcAGAUAGGGCCc- -3'
miRNA:   3'- gCG-GUCCCaGCU-------CC-UCUAUCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 87280 0.69 0.568127
Target:  5'- gGCgGGGGUCGAGGccGAcgcGGGCCu- -3'
miRNA:   3'- gCGgUCCCAGCUCCu-CUau-CCCGGca -5'
21480 5' -60.2 NC_004812.1 + 86792 0.69 0.577919
Target:  5'- gCGaCCGGGGggaGAGGAGG-AGGGCgGc -3'
miRNA:   3'- -GC-GGUCCCag-CUCCUCUaUCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 84941 0.76 0.220957
Target:  5'- cCGCC-GGGUCGAguggcugggGGAGGcgUGGGGCCGg -3'
miRNA:   3'- -GCGGuCCCAGCU---------CCUCU--AUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 81988 0.7 0.510448
Target:  5'- gGCgGGGGccgUCGAGGAGcUGGGcgugGCCGUg -3'
miRNA:   3'- gCGgUCCC---AGCUCCUCuAUCC----CGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.