miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 5' -60.2 NC_004812.1 + 127479 0.72 0.387239
Target:  5'- gCGCCGGGGggaGGGGGGGaGGGGUgGg -3'
miRNA:   3'- -GCGGUCCCag-CUCCUCUaUCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 97166 0.73 0.36659
Target:  5'- uCGCCGGGGUCGucguGGGGGUcgucgucguccuggcGGGGCUc- -3'
miRNA:   3'- -GCGGUCCCAGCu---CCUCUA---------------UCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 5086 0.72 0.376819
Target:  5'- gGCCGGGGUCcggccggggaggcgGGGGAGucUGGGGuCCGg -3'
miRNA:   3'- gCGGUCCCAG--------------CUCCUCu-AUCCC-GGCa -5'
21480 5' -60.2 NC_004812.1 + 78943 0.72 0.379207
Target:  5'- gGCUGGGGUCGGGGGugcgccgGGGGUCGg -3'
miRNA:   3'- gCGGUCCCAGCUCCUcua----UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 78977 0.72 0.379207
Target:  5'- gCGCCgGGGGUCGGGGGugcgccgGGGGUCGg -3'
miRNA:   3'- -GCGG-UCCCAGCUCCUcua----UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 150841 0.72 0.379207
Target:  5'- cCGCgAGcGGaCGGGGAGAggagaGGGGCCGg -3'
miRNA:   3'- -GCGgUC-CCaGCUCCUCUa----UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 78707 0.72 0.386431
Target:  5'- gGCUGGGGUCGGGGgucggccGGcUGGGGUCGg -3'
miRNA:   3'- gCGGUCCCAGCUCC-------UCuAUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 78785 0.72 0.386431
Target:  5'- gGCUGGGGUCGGGGgucggccGGcUGGGGUCGg -3'
miRNA:   3'- gCGGUCCCAGCUCC-------UCuAUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 72750 0.72 0.387239
Target:  5'- aCGuCCGGGGgccCGGGGGGGUcGGGCUGc -3'
miRNA:   3'- -GC-GGUCCCa--GCUCCUCUAuCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 99221 0.73 0.340012
Target:  5'- uGCCGGGcgaacgcGUCGgcGGGGGcgGGGGCCGUc -3'
miRNA:   3'- gCGGUCC-------CAGC--UCCUCuaUCCCGGCA- -5'
21480 5' -60.2 NC_004812.1 + 7641 0.74 0.316959
Target:  5'- gGCCGGGGUCGGGGcGcgAagcugcgggcccgcGGGCCGg -3'
miRNA:   3'- gCGGUCCCAGCUCCuCuaU--------------CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 6002 0.74 0.312076
Target:  5'- gCGCCGGGGggCGAGGGGAagGGGGaCGc -3'
miRNA:   3'- -GCGGUCCCa-GCUCCUCUa-UCCCgGCa -5'
21480 5' -60.2 NC_004812.1 + 84941 0.76 0.220957
Target:  5'- cCGCC-GGGUCGAguggcugggGGAGGcgUGGGGCCGg -3'
miRNA:   3'- -GCGGuCCCAGCU---------CCUCU--AUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 36893 0.76 0.226252
Target:  5'- gCGCCgAGGGUCGGGGGGAcgagGGGGaCGg -3'
miRNA:   3'- -GCGG-UCCCAGCUCCUCUa---UCCCgGCa -5'
21480 5' -60.2 NC_004812.1 + 6258 0.76 0.231655
Target:  5'- gCGCCcGcGGUCGGGGGGGagcUAGGGCCa- -3'
miRNA:   3'- -GCGGuC-CCAGCUCCUCU---AUCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 6132 0.75 0.254359
Target:  5'- uGCCGGGGaaggcgggCGAGGGGAagGGGGUCGg -3'
miRNA:   3'- gCGGUCCCa-------GCUCCUCUa-UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 992 0.75 0.254359
Target:  5'- uCGCCGGGGUCcuGGGGGUccGGGGUCGc -3'
miRNA:   3'- -GCGGUCCCAGcuCCUCUA--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 154742 0.75 0.272562
Target:  5'- gGCgGGGGUCGcGGAGGagcGGGCCGg -3'
miRNA:   3'- gCGgUCCCAGCuCCUCUau-CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 54679 0.74 0.305199
Target:  5'- gGCCGGGucgcggCGAGGAGGgcgAGGGCCa- -3'
miRNA:   3'- gCGGUCCca----GCUCCUCUa--UCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 148198 0.74 0.305199
Target:  5'- gGCCucacGGGUCGAGGGcugcGggGGGGCCGc -3'
miRNA:   3'- gCGGu---CCCAGCUCCU----CuaUCCCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.