miRNA display CGI


Results 81 - 100 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 5' -60.2 NC_004812.1 + 70912 0.7 0.529435
Target:  5'- uCGCgCGGGGgggCG-GGAGGUGGGaucuGCCGUc -3'
miRNA:   3'- -GCG-GUCCCa--GCuCCUCUAUCC----CGGCA- -5'
21480 5' -60.2 NC_004812.1 + 38678 0.69 0.539025
Target:  5'- gGUCAGGuccaucgcaccGaCGAGGGGGUAGGGCaCGUu -3'
miRNA:   3'- gCGGUCC-----------CaGCUCCUCUAUCCCG-GCA- -5'
21480 5' -60.2 NC_004812.1 + 724 0.69 0.539025
Target:  5'- gCGCCGGcgcGGUCGccggcGGGGGUGGGGgCGg -3'
miRNA:   3'- -GCGGUC---CCAGCu----CCUCUAUCCCgGCa -5'
21480 5' -60.2 NC_004812.1 + 143876 0.69 0.539025
Target:  5'- uCGCgGGGGU---GGGGGUGGGGCgGUg -3'
miRNA:   3'- -GCGgUCCCAgcuCCUCUAUCCCGgCA- -5'
21480 5' -60.2 NC_004812.1 + 7545 0.69 0.548675
Target:  5'- gCGCggggaCGGGGgagcgCGGGGAGAcucUGGGGUCGg -3'
miRNA:   3'- -GCG-----GUCCCa----GCUCCUCU---AUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 46510 0.69 0.548675
Target:  5'- gGUCccgGGGGUCGucuGGGGGAgcAGGGCCGc -3'
miRNA:   3'- gCGG---UCCCAGC---UCCUCUa-UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 104777 0.69 0.548675
Target:  5'- aCGCgGgGGGUCcAGGGGccGUAGGGCUGg -3'
miRNA:   3'- -GCGgU-CCCAGcUCCUC--UAUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 5653 0.7 0.482523
Target:  5'- uCGCCGGGcG-CGAGGGGAgcccgcaGGGGCaCGg -3'
miRNA:   3'- -GCGGUCC-CaGCUCCUCUa------UCCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 6076 0.7 0.482523
Target:  5'- gGCgaAGGGgggCGAGGGGAagGGGGUCGg -3'
miRNA:   3'- gCGg-UCCCa--GCUCCUCUa-UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 77457 0.71 0.473379
Target:  5'- gGCCGGGGggcucguggCGAgcGGAGGcGGGGCUGg -3'
miRNA:   3'- gCGGUCCCa--------GCU--CCUCUaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 72493 0.71 0.432495
Target:  5'- gCGCCucGGGGUCGGGGggcgcgccgccgccgGGGUccGGGCCGg -3'
miRNA:   3'- -GCGG--UCCCAGCUCC---------------UCUAu-CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 79013 0.71 0.437712
Target:  5'- gCGCCgGGGGUUGGGGgucggcuggcugGGGUcgGGGGCCGc -3'
miRNA:   3'- -GCGG-UCCCAGCUCC------------UCUA--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 155879 0.71 0.437712
Target:  5'- gCGgCGGGGgaGGGGAGGggcGGGGCCGg -3'
miRNA:   3'- -GCgGUCCCagCUCCUCUa--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 155308 0.71 0.446485
Target:  5'- gGCCcgGGGGUCGGcgccccgccuccGGGGAcccugGGGGCCGg -3'
miRNA:   3'- gCGG--UCCCAGCU------------CCUCUa----UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 124250 0.71 0.446485
Target:  5'- gGCC-GGGUCGAGGGcGGUcgugGGGGCgGg -3'
miRNA:   3'- gCGGuCCCAGCUCCU-CUA----UCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 3322 0.71 0.464322
Target:  5'- aGCCAGGG--GAGGGGcccgaGGGGCCGc -3'
miRNA:   3'- gCGGUCCCagCUCCUCua---UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 106554 0.71 0.464322
Target:  5'- aCGCCGGGGagcugaggGAGGAGGcgcccGGGCCGg -3'
miRNA:   3'- -GCGGUCCCag------CUCCUCUau---CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 72300 0.71 0.472469
Target:  5'- gGCCGGGG-CGGGGGGAcGGaucgaucgggcgcGGCCGg -3'
miRNA:   3'- gCGGUCCCaGCUCCUCUaUC-------------CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 68225 0.71 0.473379
Target:  5'- gGCCGGGGgugCGcGGGGGccGGGGCCu- -3'
miRNA:   3'- gCGGUCCCa--GC-UCCUCuaUCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 117612 0.69 0.558377
Target:  5'- gGCCGGGGgagGGGGGGcgGcgcGGGCCGc -3'
miRNA:   3'- gCGGUCCCag-CUCCUCuaU---CCCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.