miRNA display CGI


Results 21 - 40 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 5' -60.2 NC_004812.1 + 59614 0.71 0.446485
Target:  5'- gCGCUagAGGG-CGuGGGGGUGGGGCgGg -3'
miRNA:   3'- -GCGG--UCCCaGCuCCUCUAUCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 30671 0.72 0.420466
Target:  5'- gGCCgcgcgaggaaGGGGagGGGGGGAgGGGGCCGc -3'
miRNA:   3'- gCGG----------UCCCagCUCCUCUaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 88942 0.74 0.312076
Target:  5'- cCGCCGGuGG-CGAGGAGGgcGcGGCCGg -3'
miRNA:   3'- -GCGGUC-CCaGCUCCUCUauC-CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 37033 0.75 0.254359
Target:  5'- uGCCGGGGaaggcgggCGAGGGGAagGGGGUCGg -3'
miRNA:   3'- gCGGUCCCa-------GCUCCUCUa-UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 105798 0.7 0.510448
Target:  5'- uCGCCGGGGggCuuGGGGGUGGGGgcuCCGg -3'
miRNA:   3'- -GCGGUCCCa-GcuCCUCUAUCCC---GGCa -5'
21480 5' -60.2 NC_004812.1 + 105686 0.71 0.464322
Target:  5'- aCGCCGGGGcccCGaAGGcGGGUggcGGGGCCGg -3'
miRNA:   3'- -GCGGUCCCa--GC-UCC-UCUA---UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 156065 0.72 0.395383
Target:  5'- gCGCCGGGG-CG-GGAGGcgggAGGGCCc- -3'
miRNA:   3'- -GCGGUCCCaGCuCCUCUa---UCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 91118 0.76 0.237166
Target:  5'- gGCCguGGGGUCGcuuGGGGGcGGGGCCGg -3'
miRNA:   3'- gCGG--UCCCAGCu--CCUCUaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 1971 0.71 0.464322
Target:  5'- gCGCCGGGGggaGGGGGGGaGGGGUgGc -3'
miRNA:   3'- -GCGGUCCCag-CUCCUCUaUCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 37159 0.76 0.231655
Target:  5'- gCGCCcGcGGUCGGGGGGGagcUAGGGCCa- -3'
miRNA:   3'- -GCGGuC-CCAGCUCCUCU---AUCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 16748 0.72 0.403636
Target:  5'- gGCCuGGGgcucagUCGGGGGGcgcgGGGGCCGg -3'
miRNA:   3'- gCGGuCCC------AGCUCCUCua--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 155151 0.71 0.446485
Target:  5'- gGCC-GGGUCGAGGGcGGUcgugGGGGCgGg -3'
miRNA:   3'- gCGGuCCCAGCUCCU-CUA----UCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 78310 0.73 0.348213
Target:  5'- aCGCCGGGG-CGGGGGcggAGGGCCc- -3'
miRNA:   3'- -GCGGUCCCaGCUCCUcuaUCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 38542 0.74 0.316959
Target:  5'- gGCCGGGGUCGGGGcGcgAagcugcgggcccgcGGGCCGg -3'
miRNA:   3'- gCGGUCCCAGCUCCuCuaU--------------CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 17154 0.75 0.262726
Target:  5'- gGCCGGGGggagucguggcgucCGAGGGGAcAGGGCCa- -3'
miRNA:   3'- gCGGUCCCa-------------GCUCCUCUaUCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 100845 0.75 0.254359
Target:  5'- aCGCCGGGGagggCGAGGAc--GGGGCCGc -3'
miRNA:   3'- -GCGGUCCCa---GCUCCUcuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 31625 0.69 0.539025
Target:  5'- gCGCCGGcgcGGUCGccggcGGGGGUGGGGgCGg -3'
miRNA:   3'- -GCGGUC---CCAGCu----CCUCUAUCCCgGCa -5'
21480 5' -60.2 NC_004812.1 + 38846 0.7 0.519908
Target:  5'- gGCCGGGGggcgCGuccGGGG--GGGGCCGa -3'
miRNA:   3'- gCGGUCCCa---GCu--CCUCuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 81988 0.7 0.510448
Target:  5'- gGCgGGGGccgUCGAGGAGcUGGGcgugGCCGUg -3'
miRNA:   3'- gCGgUCCC---AGCUCCUCuAUCC----CGGCA- -5'
21480 5' -60.2 NC_004812.1 + 36977 0.7 0.482523
Target:  5'- gGCgaAGGGgggCGAGGGGAagGGGGUCGg -3'
miRNA:   3'- gCGg-UCCCa--GCUCCUCUa-UCCCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.