miRNA display CGI


Results 41 - 60 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 5' -60.2 NC_004812.1 + 17932 0.7 0.510448
Target:  5'- gGCCc-GGUCGGGGGGGgagagGGGGUCGc -3'
miRNA:   3'- gCGGucCCAGCUCCUCUa----UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 156065 0.72 0.395383
Target:  5'- gCGCCGGGG-CG-GGAGGcgggAGGGCCc- -3'
miRNA:   3'- -GCGGUCCCaGCuCCUCUa---UCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 91118 0.76 0.237166
Target:  5'- gGCCguGGGGUCGcuuGGGGGcGGGGCCGg -3'
miRNA:   3'- gCGG--UCCCAGCu--CCUCUaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 11305 0.7 0.510448
Target:  5'- cCGCgCGGGGcgcCGcGGGGcgGGGGCCGg -3'
miRNA:   3'- -GCG-GUCCCa--GCuCCUCuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 37159 0.76 0.231655
Target:  5'- gCGCCcGcGGUCGGGGGGGagcUAGGGCCa- -3'
miRNA:   3'- -GCGGuC-CCAGCUCCUCU---AUCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 75148 0.69 0.577919
Target:  5'- aCGCCGucGUCGGGGAGGcccccgaucgccUGGGGCCc- -3'
miRNA:   3'- -GCGGUccCAGCUCCUCU------------AUCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 100845 0.75 0.254359
Target:  5'- aCGCCGGGGagggCGAGGAc--GGGGCCGc -3'
miRNA:   3'- -GCGGUCCCa---GCUCCUcuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 86792 0.69 0.577919
Target:  5'- gCGaCCGGGGggaGAGGAGG-AGGGCgGc -3'
miRNA:   3'- -GC-GGUCCCag-CUCCUCUaUCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 30399 0.69 0.568127
Target:  5'- gCGCCcGGGcugccgcgcCGAGGAGGccGGGCCGc -3'
miRNA:   3'- -GCGGuCCCa--------GCUCCUCUauCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 31789 0.69 0.558377
Target:  5'- uCGCCgGGGGUCcuGGGGGUccGGGGUCGc -3'
miRNA:   3'- -GCGG-UCCCAGcuCCUCUA--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 61262 0.69 0.548675
Target:  5'- -uCCGGGGgCGGGGAGGgggGGGuGCUGUg -3'
miRNA:   3'- gcGGUCCCaGCUCCUCUa--UCC-CGGCA- -5'
21480 5' -60.2 NC_004812.1 + 31625 0.69 0.539025
Target:  5'- gCGCCGGcgcGGUCGccggcGGGGGUGGGGgCGg -3'
miRNA:   3'- -GCGGUC---CCAGCu----CCUCUAUCCCgGCa -5'
21480 5' -60.2 NC_004812.1 + 38846 0.7 0.519908
Target:  5'- gGCCGGGGggcgCGuccGGGG--GGGGCCGa -3'
miRNA:   3'- gCGGUCCCa---GCu--CCUCuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 36554 0.7 0.482523
Target:  5'- uCGCCGGGcG-CGAGGGGAgcccgcaGGGGCaCGg -3'
miRNA:   3'- -GCGGUCC-CaGCUCCUCUa------UCCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 1971 0.71 0.464322
Target:  5'- gCGCCGGGGggaGGGGGGGaGGGGUgGc -3'
miRNA:   3'- -GCGGUCCCag-CUCCUCUaUCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 59614 0.71 0.446485
Target:  5'- gCGCUagAGGG-CGuGGGGGUGGGGCgGg -3'
miRNA:   3'- -GCGG--UCCCaGCuCCUCUAUCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 30671 0.72 0.420466
Target:  5'- gGCCgcgcgaggaaGGGGagGGGGGGAgGGGGCCGc -3'
miRNA:   3'- gCGG----------UCCCagCUCCUCUaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 78310 0.73 0.348213
Target:  5'- aCGCCGGGG-CGGGGGcggAGGGCCc- -3'
miRNA:   3'- -GCGGUCCCaGCUCCUcuaUCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 38542 0.74 0.316959
Target:  5'- gGCCGGGGUCGGGGcGcgAagcugcgggcccgcGGGCCGg -3'
miRNA:   3'- gCGGUCCCAGCUCCuCuaU--------------CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 17154 0.75 0.262726
Target:  5'- gGCCGGGGggagucguggcgucCGAGGGGAcAGGGCCa- -3'
miRNA:   3'- gCGGUCCCa-------------GCUCCUCUaUCCCGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.