miRNA display CGI


Results 61 - 80 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 5' -60.2 NC_004812.1 + 38846 0.7 0.519908
Target:  5'- gGCCGGGGggcgCGuccGGGG--GGGGCCGa -3'
miRNA:   3'- gCGGUCCCa---GCu--CCUCuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 114993 0.69 0.539025
Target:  5'- aCGUCAGGGUgGAGGAGGcAGacGCUGUc -3'
miRNA:   3'- -GCGGUCCCAgCUCCUCUaUCc-CGGCA- -5'
21480 5' -60.2 NC_004812.1 + 16826 0.75 0.254359
Target:  5'- gCGCCgcGGGGUCG-GGGGGUAGGGgUGg -3'
miRNA:   3'- -GCGG--UCCCAGCuCCUCUAUCCCgGCa -5'
21480 5' -60.2 NC_004812.1 + 29234 0.75 0.272562
Target:  5'- gGCgGGGGUCGcGGAGGagcGGGCCGg -3'
miRNA:   3'- gCGgUCCCAGCuCCUCUau-CCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 63252 0.74 0.318365
Target:  5'- uGCUgGGGGUCGAGGAGGcgaagaagaacuuUAGGGUCGc -3'
miRNA:   3'- gCGG-UCCCAGCUCCUCU-------------AUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 35987 0.72 0.376819
Target:  5'- gGCCGGGGUCcggccggggaggcgGGGGAGucUGGGGuCCGg -3'
miRNA:   3'- gCGGUCCCAG--------------CUCCUCu-AUCCC-GGCa -5'
21480 5' -60.2 NC_004812.1 + 30371 0.71 0.437712
Target:  5'- gCGgCGGGGgaGGGGAGGggcGGGGCCGg -3'
miRNA:   3'- -GCgGUCCCagCUCCUCUa--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 155151 0.71 0.446485
Target:  5'- gGCC-GGGUCGAGGGcGGUcgugGGGGCgGg -3'
miRNA:   3'- gCGGuCCCAGCUCCU-CUA----UCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 105686 0.71 0.464322
Target:  5'- aCGCCGGGGcccCGaAGGcGGGUggcGGGGCCGg -3'
miRNA:   3'- -GCGGUCCCa--GC-UCC-UCUA---UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 99224 0.7 0.501062
Target:  5'- uCGCguGGGgcagCGGGGAGGUGaagcGGGCgGUc -3'
miRNA:   3'- -GCGguCCCa---GCUCCUCUAU----CCCGgCA- -5'
21480 5' -60.2 NC_004812.1 + 35744 0.67 0.696355
Target:  5'- aGCCcccugcGGGGcCGGGGA---GGGGCCGc -3'
miRNA:   3'- gCGG------UCCCaGCUCCUcuaUCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 44169 0.67 0.68069
Target:  5'- gCGCuCGGGGgccgagccggucugCGGcGGGGGUGGGGCuCGg -3'
miRNA:   3'- -GCG-GUCCCa-------------GCU-CCUCUAUCCCG-GCa -5'
21480 5' -60.2 NC_004812.1 + 13388 0.69 0.558377
Target:  5'- gCGCCgGGGGUCGGGGgcgcggcggGGGUGacGGCCGg -3'
miRNA:   3'- -GCGG-UCCCAGCUCC---------UCUAUc-CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 31893 0.69 0.558377
Target:  5'- uCGCCgGGGGUCcuGGGGGUccGGGGUCGc -3'
miRNA:   3'- -GCGG-UCCCAGcuCCUCUA--UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 86792 0.69 0.577919
Target:  5'- gCGaCCGGGGggaGAGGAGG-AGGGCgGc -3'
miRNA:   3'- -GC-GGUCCCag-CUCCUCUaUCCCGgCa -5'
21480 5' -60.2 NC_004812.1 + 75148 0.69 0.577919
Target:  5'- aCGCCGucGUCGGGGAGGcccccgaucgccUGGGGCCc- -3'
miRNA:   3'- -GCGGUccCAGCUCCUCU------------AUCCCGGca -5'
21480 5' -60.2 NC_004812.1 + 19879 0.68 0.623335
Target:  5'- gCGUCGuGGGcgCGGGGGGGgucgugggugcugGGGGCCGg -3'
miRNA:   3'- -GCGGU-CCCa-GCUCCUCUa------------UCCCGGCa -5'
21480 5' -60.2 NC_004812.1 + 155521 0.68 0.637214
Target:  5'- cCGCCGGGcagGAGGAGAccGcGGCCGg -3'
miRNA:   3'- -GCGGUCCcagCUCCUCUauC-CCGGCa -5'
21480 5' -60.2 NC_004812.1 + 37836 0.67 0.657024
Target:  5'- gGCCGGGGUgGGGGGGAagcGGGGa--- -3'
miRNA:   3'- gCGGUCCCAgCUCCUCUa--UCCCggca -5'
21480 5' -60.2 NC_004812.1 + 30502 0.67 0.676758
Target:  5'- gGCgCGGGG--GAGGGGAcgcccGGGGCCGg -3'
miRNA:   3'- gCG-GUCCCagCUCCUCUa----UCCCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.