miRNA display CGI


Results 21 - 40 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21482 3' -56.2 NC_004812.1 + 136119 0.66 0.909617
Target:  5'- cCACACCUUCCCgggggUCgGGCGcgugaagaaCCUCa -3'
miRNA:   3'- -GUGUGGAGGGGaa---AGgUCGCaa-------GGGG- -5'
21482 3' -56.2 NC_004812.1 + 132062 0.66 0.909617
Target:  5'- cUACAUCUCCCCggagcugCgGGUGgugacgcagCCCCg -3'
miRNA:   3'- -GUGUGGAGGGGaaa----GgUCGCaa-------GGGG- -5'
21482 3' -56.2 NC_004812.1 + 105232 0.66 0.909016
Target:  5'- gGCGCCUCCCacugcugggcguaCUggggcgCgGGCGgcUCCCCg -3'
miRNA:   3'- gUGUGGAGGG-------------GAaa----GgUCGCa-AGGGG- -5'
21482 3' -56.2 NC_004812.1 + 146082 0.66 0.907197
Target:  5'- uCACGCCgagacuuucccgcCCCCgccUCCGGCuucucUCCCCu -3'
miRNA:   3'- -GUGUGGa------------GGGGaa-AGGUCGca---AGGGG- -5'
21482 3' -56.2 NC_004812.1 + 144930 0.66 0.905973
Target:  5'- cCGCAgCUgCCCgagugccgcucgCCGGCGgacgCCCCg -3'
miRNA:   3'- -GUGUgGAgGGGaaa---------GGUCGCaa--GGGG- -5'
21482 3' -56.2 NC_004812.1 + 46761 0.66 0.903498
Target:  5'- cCACugCcgCCUCg--CCAGCGgagaucucgCCCCg -3'
miRNA:   3'- -GUGugGa-GGGGaaaGGUCGCaa-------GGGG- -5'
21482 3' -56.2 NC_004812.1 + 135947 0.66 0.903498
Target:  5'- -cCACCUCCUCgcucucCCAcGCGgcgUCCUCg -3'
miRNA:   3'- guGUGGAGGGGaaa---GGU-CGCa--AGGGG- -5'
21482 3' -56.2 NC_004812.1 + 29061 0.66 0.901617
Target:  5'- cCGCGCC-CCCCgccgCCgaccgaggcccgccGGCGUcggcgCCCCg -3'
miRNA:   3'- -GUGUGGaGGGGaaa-GG--------------UCGCAa----GGGG- -5'
21482 3' -56.2 NC_004812.1 + 154570 0.66 0.901617
Target:  5'- cCGCGCC-CCCCgccgCCgaccgaggcccgccGGCGUcggcgCCCCg -3'
miRNA:   3'- -GUGUGGaGGGGaaa-GG--------------UCGCAa----GGGG- -5'
21482 3' -56.2 NC_004812.1 + 51815 0.66 0.897147
Target:  5'- aGCACCgCCCCca-CCAGCccuacggCCCCc -3'
miRNA:   3'- gUGUGGaGGGGaaaGGUCGcaa----GGGG- -5'
21482 3' -56.2 NC_004812.1 + 119570 0.66 0.897147
Target:  5'- gACcccCUUCCCCUcgCCcGCcUUCCCCg -3'
miRNA:   3'- gUGu--GGAGGGGAaaGGuCGcAAGGGG- -5'
21482 3' -56.2 NC_004812.1 + 2609 0.66 0.897147
Target:  5'- gGCACCggacUCUCCgcgCCGGCcccgCCCCg -3'
miRNA:   3'- gUGUGG----AGGGGaaaGGUCGcaa-GGGG- -5'
21482 3' -56.2 NC_004812.1 + 31590 0.66 0.897147
Target:  5'- aGCGCgUCCCCgggUCCGGag--CUCCg -3'
miRNA:   3'- gUGUGgAGGGGaa-AGGUCgcaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 8097 0.66 0.897147
Target:  5'- cCGCGCCgcccCCCCUcccCCGGCccggaaCCCCg -3'
miRNA:   3'- -GUGUGGa---GGGGAaa-GGUCGcaa---GGGG- -5'
21482 3' -56.2 NC_004812.1 + 104303 0.66 0.897147
Target:  5'- cCGC-CCaCCCCgacgCCGGCcGggCCCCg -3'
miRNA:   3'- -GUGuGGaGGGGaaa-GGUCG-CaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 18289 0.66 0.897147
Target:  5'- aGgGCCUCCuCCgcgCCGGCGccaCCCu -3'
miRNA:   3'- gUgUGGAGG-GGaaaGGUCGCaagGGG- -5'
21482 3' -56.2 NC_004812.1 + 145547 0.66 0.897147
Target:  5'- -uCGCCUCCCCggcacggacCCGGC---CCCCa -3'
miRNA:   3'- guGUGGAGGGGaaa------GGUCGcaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 689 0.66 0.897147
Target:  5'- aGCGCgUCCCCgggUCCGGag--CUCCg -3'
miRNA:   3'- gUGUGgAGGGGaa-AGGUCgcaaGGGG- -5'
21482 3' -56.2 NC_004812.1 + 38998 0.66 0.897147
Target:  5'- cCGCGCCgcccCCCCUcccCCGGCccggaaCCCCg -3'
miRNA:   3'- -GUGUGGa---GGGGAaa-GGUCGcaa---GGGG- -5'
21482 3' -56.2 NC_004812.1 + 150471 0.66 0.897147
Target:  5'- gACcccCUUCCCCUcgCCcGCcUUCCCCg -3'
miRNA:   3'- gUGu--GGAGGGGAaaGGuCGcAAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.