Results 21 - 40 of 238 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21482 | 5' | -52.8 | NC_004812.1 | + | 113244 | 0.66 | 0.972629 |
Target: 5'- -cGGugGGcCGCUcGCGGGGGGGguGGACg -3' miRNA: 3'- uuCUugCU-GCGGuUGUCUCCUC--UCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 36951 | 0.66 | 0.972629 |
Target: 5'- uAGGGCGGCGaggggaaggCGGCGGAGGcgaagGGGGGCg -3' miRNA: 3'- uUCUUGCUGCg--------GUUGUCUCC-----UCUCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 30043 | 0.66 | 0.972629 |
Target: 5'- cGGGAGgGGCGgggGAgGGGGGAGGGGCg -3' miRNA: 3'- -UUCUUgCUGCgg-UUgUCUCCUCUCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 133064 | 0.66 | 0.972629 |
Target: 5'- --cGACGAUGCCGGCGGcGGcGAuGGCg -3' miRNA: 3'- uucUUGCUGCGGUUGUCuCCuCU-CUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 1420 | 0.66 | 0.972629 |
Target: 5'- --cGACGGCGgCcGCGG-GGAGGGGCc -3' miRNA: 3'- uucUUGCUGCgGuUGUCuCCUCUCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 39529 | 0.66 | 0.972629 |
Target: 5'- --aAugGACGCgAgggGCGGGGGAGcGGGCg -3' miRNA: 3'- uucUugCUGCGgU---UGUCUCCUC-UCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 6050 | 0.66 | 0.972629 |
Target: 5'- uAGGGCGGCGaggggaaggCGGCGGAGGcgaagGGGGGCg -3' miRNA: 3'- uUCUUGCUGCg--------GUUGUCUCC-----UCUCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 106042 | 0.66 | 0.969693 |
Target: 5'- --cAACGGCGCgAcGCAGGGGuccgagGGAGACu -3' miRNA: 3'- uucUUGCUGCGgU-UGUCUCC------UCUCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 133888 | 0.66 | 0.969693 |
Target: 5'- gGAGAGCGAUugcucaucgGCCGugguaaccccggGCGGGGGGGAcGCg -3' miRNA: 3'- -UUCUUGCUG---------CGGU------------UGUCUCCUCUcUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 75590 | 0.66 | 0.969387 |
Target: 5'- gAAGAACGGCacguaguGCC-GCAG-GGAGGGcACg -3' miRNA: 3'- -UUCUUGCUG-------CGGuUGUCuCCUCUC-UG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 80637 | 0.66 | 0.966538 |
Target: 5'- gGAGAGgGGCGgggaguCCGGCAGcGGGAGgAGGCu -3' miRNA: 3'- -UUCUUgCUGC------GGUUGUC-UCCUC-UCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 35942 | 0.66 | 0.966538 |
Target: 5'- cGGGGCaGCGCCGcggucACGGGGGcccgggcgGGAGACu -3' miRNA: 3'- uUCUUGcUGCGGU-----UGUCUCC--------UCUCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 69802 | 0.66 | 0.966538 |
Target: 5'- cGGGACGggaaACGUCGACGGGGGccgAGGGGg -3' miRNA: 3'- uUCUUGC----UGCGGUUGUCUCC---UCUCUg -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 62037 | 0.66 | 0.966538 |
Target: 5'- cGAGAgACGGCgGgCGGCAGAGGcuGGGGCc -3' miRNA: 3'- -UUCU-UGCUG-CgGUUGUCUCCu-CUCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 91133 | 0.66 | 0.966538 |
Target: 5'- uGGGGGCGGgGCCggUcGGGGAcGGGCg -3' miRNA: 3'- -UUCUUGCUgCGGuuGuCUCCUcUCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 20880 | 0.66 | 0.966538 |
Target: 5'- -cGGACGGC-CUcGCGGucGGAGAGACc -3' miRNA: 3'- uuCUUGCUGcGGuUGUCu-CCUCUCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 26422 | 0.66 | 0.966538 |
Target: 5'- uGGGGCG-CGCCGGaGGuGGAcGAGGCg -3' miRNA: 3'- uUCUUGCuGCGGUUgUCuCCU-CUCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 151930 | 0.66 | 0.966538 |
Target: 5'- uGGGGCG-CGCCGGaGGuGGAcGAGGCg -3' miRNA: 3'- uUCUUGCuGCGGUUgUCuCCU-CUCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 5041 | 0.66 | 0.966538 |
Target: 5'- cGGGGCaGCGCCGcggucACGGGGGcccgggcgGGAGACu -3' miRNA: 3'- uUCUUGcUGCGGU-----UGUCUCC--------UCUCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 65095 | 0.66 | 0.966538 |
Target: 5'- ---cGCG-CGCCccGCGGAGGAGuGGCu -3' miRNA: 3'- uucuUGCuGCGGu-UGUCUCCUCuCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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