miRNA display CGI


Results 21 - 40 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21483 3' -60.1 NC_004812.1 + 12059 0.66 0.766199
Target:  5'- gUCGCggUGCCGUGGAGacuguacgcGAugGuuGCGGGa -3'
miRNA:   3'- -AGCG--ACGGCGCCUC---------CUugCcuCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 108032 0.66 0.766199
Target:  5'- gUCGCcGCCgGUGGAGGuGACGGcGCu-- -3'
miRNA:   3'- -AGCGaCGG-CGCCUCC-UUGCCuCGcuc -5'
21483 3' -60.1 NC_004812.1 + 117609 0.66 0.766199
Target:  5'- cCGg-GCCGggggaGGGGGGGCGGcGCGGGc -3'
miRNA:   3'- aGCgaCGGCg----CCUCCUUGCCuCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 36439 0.66 0.766199
Target:  5'- -gGCggGCCGgGGgccccccagAGGGGCGGAG-GAGg -3'
miRNA:   3'- agCGa-CGGCgCC---------UCCUUGCCUCgCUC- -5'
21483 3' -60.1 NC_004812.1 + 6255 0.66 0.766199
Target:  5'- cUCGC-GcCCGCGGucGGGGgGGAGCuAGg -3'
miRNA:   3'- -AGCGaC-GGCGCCu-CCUUgCCUCGcUC- -5'
21483 3' -60.1 NC_004812.1 + 37156 0.66 0.766199
Target:  5'- cUCGC-GcCCGCGGucGGGGgGGAGCuAGg -3'
miRNA:   3'- -AGCGaC-GGCGCCu-CCUUgCCUCGcUC- -5'
21483 3' -60.1 NC_004812.1 + 1941 0.66 0.766199
Target:  5'- gCGCUccGcCCGuCGGGGGGACGGGuGCa-- -3'
miRNA:   3'- aGCGA--C-GGC-GCCUCCUUGCCU-CGcuc -5'
21483 3' -60.1 NC_004812.1 + 38606 0.66 0.766199
Target:  5'- gUCGCgccgaguccGCgGCGGGGGucuccGCGccGGGCGAGg -3'
miRNA:   3'- -AGCGa--------CGgCGCCUCCu----UGC--CUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 81988 0.66 0.766199
Target:  5'- -gGCggggGCCGUcGAGGAGCuGGGCGuGg -3'
miRNA:   3'- agCGa---CGGCGcCUCCUUGcCUCGCuC- -5'
21483 3' -60.1 NC_004812.1 + 2041 0.66 0.766199
Target:  5'- cUCGgucgGCgGCGGGGGGcGCGGGG-GAGg -3'
miRNA:   3'- -AGCga--CGgCGCCUCCU-UGCCUCgCUC- -5'
21483 3' -60.1 NC_004812.1 + 53116 0.66 0.766199
Target:  5'- gCGCgGCCGUcGcGGAGCGGuacuaccGCGAGa -3'
miRNA:   3'- aGCGaCGGCGcCuCCUUGCCu------CGCUC- -5'
21483 3' -60.1 NC_004812.1 + 148510 0.66 0.766199
Target:  5'- cCGg-GCCGggggaGGGGGGGCGGcGCGGGc -3'
miRNA:   3'- aGCgaCGGCg----CCUCCUUGCCuCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 62012 0.66 0.766199
Target:  5'- gCGCgggacagGCCGCGGcgAGGcggccucgGGCGGAG-GAGg -3'
miRNA:   3'- aGCGa------CGGCGCC--UCC--------UUGCCUCgCUC- -5'
21483 3' -60.1 NC_004812.1 + 32842 0.66 0.766199
Target:  5'- gCGCUccGcCCGuCGGGGGGACGGGuGCa-- -3'
miRNA:   3'- aGCGA--C-GGC-GCCUCCUUGCCU-CGcuc -5'
21483 3' -60.1 NC_004812.1 + 78544 0.66 0.766199
Target:  5'- -gGCUGCCGCaaGGGGGcucCGGgggcuGGCGAu -3'
miRNA:   3'- agCGACGGCG--CCUCCuu-GCC-----UCGCUc -5'
21483 3' -60.1 NC_004812.1 + 62125 0.66 0.765284
Target:  5'- gCGCggcgGCC-CGGAGGccggaucGGCGGcGCGGGc -3'
miRNA:   3'- aGCGa---CGGcGCCUCC-------UUGCCuCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 126714 0.66 0.760693
Target:  5'- aUCGCgGCCcaccugcacgaggugGuCGGGGGaAGCGGGGCGcGGa -3'
miRNA:   3'- -AGCGaCGG---------------C-GCCUCC-UUGCCUCGC-UC- -5'
21483 3' -60.1 NC_004812.1 + 136694 0.66 0.757
Target:  5'- cCGCcGgCGCGGuGGcGGCGGcGCGGGc -3'
miRNA:   3'- aGCGaCgGCGCCuCC-UUGCCuCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 36278 0.66 0.757
Target:  5'- -gGCUcucCCGCGGcGGGAGgGGGGuCGGGg -3'
miRNA:   3'- agCGAc--GGCGCC-UCCUUgCCUC-GCUC- -5'
21483 3' -60.1 NC_004812.1 + 143934 0.66 0.757
Target:  5'- -gGUUG-CGUGGgagguGGGGGCGGGGUGGGa -3'
miRNA:   3'- agCGACgGCGCC-----UCCUUGCCUCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.