miRNA display CGI


Results 21 - 40 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21483 5' -56.7 NC_004812.1 + 101977 0.66 0.871566
Target:  5'- gGACGcccGCCGCccgcgcggggGGUCGCGCGacuCGCGg -3'
miRNA:   3'- -CUGCu--UGGCG----------UCAGCGCGUgu-GCGUu -5'
21483 5' -56.7 NC_004812.1 + 112980 0.66 0.870829
Target:  5'- cGGCGAuggaucgcggcGCCGCGGcCGCcgaggcagaggacGCAgACGCGAg -3'
miRNA:   3'- -CUGCU-----------UGGCGUCaGCG-------------CGUgUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 81595 0.66 0.869347
Target:  5'- aGGCGGccgagcuggaccagGCgGCGGUCGacuggcuggaGCACGCGCGg -3'
miRNA:   3'- -CUGCU--------------UGgCGUCAGCg---------CGUGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 18349 0.66 0.864092
Target:  5'- cGGCGcgcGACCGCGGcCGCcGCGgcgUACGCGGg -3'
miRNA:   3'- -CUGC---UUGGCGUCaGCG-CGU---GUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 136295 0.66 0.864092
Target:  5'- cGugGGGgCGguGcCuGCGCGCGCGCu- -3'
miRNA:   3'- -CugCUUgGCguCaG-CGCGUGUGCGuu -5'
21483 5' -56.7 NC_004812.1 + 19827 0.66 0.864092
Target:  5'- --aGGGCCacCAG-CGCGCACGCGUAc -3'
miRNA:   3'- cugCUUGGc-GUCaGCGCGUGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 72230 0.66 0.864092
Target:  5'- cGCGGACUGCggcggggcguccGGUCG-GCGgGCGCGAg -3'
miRNA:   3'- cUGCUUGGCG------------UCAGCgCGUgUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 123635 0.66 0.864092
Target:  5'- gGACGGACCGCgAGaccaugaaCGCGCAcCugGCc- -3'
miRNA:   3'- -CUGCUUGGCG-UCa-------GCGCGU-GugCGuu -5'
21483 5' -56.7 NC_004812.1 + 17907 0.66 0.864092
Target:  5'- cGCGc-CCGCGGUCGUcCGgGCGCGAg -3'
miRNA:   3'- cUGCuuGGCGUCAGCGcGUgUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 54069 0.66 0.864092
Target:  5'- uGCGAAUaaacuaGCGGUagCGCGCACccgauACGCAAa -3'
miRNA:   3'- cUGCUUGg-----CGUCA--GCGCGUG-----UGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 107434 0.66 0.864092
Target:  5'- aGGCGGuuguCCagGCGGUcCGCGUACACGUu- -3'
miRNA:   3'- -CUGCUu---GG--CGUCA-GCGCGUGUGCGuu -5'
21483 5' -56.7 NC_004812.1 + 61112 0.66 0.864092
Target:  5'- cGGCGccCCGCGG-CGCGCcggcgccCGCGCAc -3'
miRNA:   3'- -CUGCuuGGCGUCaGCGCGu------GUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 61915 0.66 0.864092
Target:  5'- -uCGGGCCGCA--CGCGCcgcCGCGCGGg -3'
miRNA:   3'- cuGCUUGGCGUcaGCGCGu--GUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 89122 0.66 0.864092
Target:  5'- cGACGGcCCGCGGgcgccagccCGCGgACGCGUGGg -3'
miRNA:   3'- -CUGCUuGGCGUCa--------GCGCgUGUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 138331 0.66 0.863332
Target:  5'- cGCGGAggaggccCUGCGGaUCGCGCACgACGCc- -3'
miRNA:   3'- cUGCUU-------GGCGUC-AGCGCGUG-UGCGuu -5'
21483 5' -56.7 NC_004812.1 + 99454 0.66 0.863332
Target:  5'- -gUGGACCGC-GUCGCGCagccccaGCACcGCGg -3'
miRNA:   3'- cuGCUUGGCGuCAGCGCG-------UGUG-CGUu -5'
21483 5' -56.7 NC_004812.1 + 47339 0.66 0.856406
Target:  5'- aGGCcu-CUGCGGUCGCGCcC-CGCAAc -3'
miRNA:   3'- -CUGcuuGGCGUCAGCGCGuGuGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 62314 0.66 0.856406
Target:  5'- cGAUGAGuuUCGCuucGUCGCGCcccGCGCGCu- -3'
miRNA:   3'- -CUGCUU--GGCGu--CAGCGCG---UGUGCGuu -5'
21483 5' -56.7 NC_004812.1 + 58295 0.66 0.856406
Target:  5'- cGCGAGCCaGCAccCGCGCGC-CGCc- -3'
miRNA:   3'- cUGCUUGG-CGUcaGCGCGUGuGCGuu -5'
21483 5' -56.7 NC_004812.1 + 27467 0.66 0.856406
Target:  5'- cGCGGGCgGCGccgCGCGCccgccgGCGCGCAAg -3'
miRNA:   3'- cUGCUUGgCGUca-GCGCG------UGUGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.