miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 3' -55 NC_004812.1 + 11310 0.66 0.936826
Target:  5'- --cGGggCGCCGcgGGGCGGG-GG-CCGg -3'
miRNA:   3'- gaaCUuaGCGGC--UUCGCCCaCCaGGC- -5'
21488 3' -55 NC_004812.1 + 105686 0.66 0.931865
Target:  5'- ------aCGCCGGggccccgaaGGCGGGUGGcggggCCGg -3'
miRNA:   3'- gaacuuaGCGGCU---------UCGCCCACCa----GGC- -5'
21488 3' -55 NC_004812.1 + 107838 0.66 0.931865
Target:  5'- -gUGAGggccUCGCgGAGGCGGG-GcUCCGc -3'
miRNA:   3'- gaACUU----AGCGgCUUCGCCCaCcAGGC- -5'
21488 3' -55 NC_004812.1 + 109616 0.67 0.926667
Target:  5'- --cGggUCGCCGGuccGGCGGGccaUGacaaccgcccGUCCGc -3'
miRNA:   3'- gaaCuuAGCGGCU---UCGCCC---AC----------CAGGC- -5'
21488 3' -55 NC_004812.1 + 96187 0.67 0.926667
Target:  5'- -gUGGucgCGCCGGAGCGGG---UCCa -3'
miRNA:   3'- gaACUua-GCGGCUUCGCCCaccAGGc -5'
21488 3' -55 NC_004812.1 + 48121 0.67 0.926667
Target:  5'- --gGGAgacggCGgaGGAGCGGGUGG-CCGu -3'
miRNA:   3'- gaaCUUa----GCggCUUCGCCCACCaGGC- -5'
21488 3' -55 NC_004812.1 + 151336 0.67 0.92123
Target:  5'- --cGAGUCgGCCGAGcGCGGGgccgcGGcggCCGa -3'
miRNA:   3'- gaaCUUAG-CGGCUU-CGCCCa----CCa--GGC- -5'
21488 3' -55 NC_004812.1 + 19649 0.67 0.92123
Target:  5'- -gUGGGcCGCCaGGGCGaGGgGGUCCGu -3'
miRNA:   3'- gaACUUaGCGGcUUCGC-CCaCCAGGC- -5'
21488 3' -55 NC_004812.1 + 35009 0.67 0.92123
Target:  5'- gUUGAgGUCGgCGAgcucGGCGGG-GGcCCGg -3'
miRNA:   3'- gAACU-UAGCgGCU----UCGCCCaCCaGGC- -5'
21488 3' -55 NC_004812.1 + 111009 0.67 0.92123
Target:  5'- -aUGAGggCGCUGGAGCGGGagcacuacugGGUCg- -3'
miRNA:   3'- gaACUUa-GCGGCUUCGCCCa---------CCAGgc -5'
21488 3' -55 NC_004812.1 + 25828 0.67 0.92123
Target:  5'- --cGAGUCgGCCGAGcGCGGGgccgcGGcggCCGa -3'
miRNA:   3'- gaaCUUAG-CGGCUU-CGCCCa----CCa--GGC- -5'
21488 3' -55 NC_004812.1 + 147068 0.67 0.915556
Target:  5'- ---cGGUgGCCGAAGCGGGgccUCCGc -3'
miRNA:   3'- gaacUUAgCGGCUUCGCCCaccAGGC- -5'
21488 3' -55 NC_004812.1 + 82197 0.67 0.915556
Target:  5'- --gGAccGUCucCCGGAGCGGGcUGGcCCGg -3'
miRNA:   3'- gaaCU--UAGc-GGCUUCGCCC-ACCaGGC- -5'
21488 3' -55 NC_004812.1 + 86623 0.67 0.915556
Target:  5'- ---cGGUUGCCc-AGCGGGUGGUCg- -3'
miRNA:   3'- gaacUUAGCGGcuUCGCCCACCAGgc -5'
21488 3' -55 NC_004812.1 + 71794 0.67 0.909646
Target:  5'- --gGggUCGCCGAAGCcgucguggcguGGG-GGUUgGc -3'
miRNA:   3'- gaaCuuAGCGGCUUCG-----------CCCaCCAGgC- -5'
21488 3' -55 NC_004812.1 + 34436 0.67 0.909646
Target:  5'- --gGcGUCGCgCGggGUGGGaUGGUCg- -3'
miRNA:   3'- gaaCuUAGCG-GCuuCGCCC-ACCAGgc -5'
21488 3' -55 NC_004812.1 + 92490 0.67 0.907216
Target:  5'- gCUUGGc-CGUCGAGGCGGcGgcccggcuuccggGGUCCGg -3'
miRNA:   3'- -GAACUuaGCGGCUUCGCC-Ca------------CCAGGC- -5'
21488 3' -55 NC_004812.1 + 28332 0.68 0.895165
Target:  5'- cCUUGGc-CGCCauaaaggcgcugacGAAGCGGG-GGUCCu -3'
miRNA:   3'- -GAACUuaGCGG--------------CUUCGCCCaCCAGGc -5'
21488 3' -55 NC_004812.1 + 38521 0.68 0.890516
Target:  5'- --gGGAcaGCCGGAGCacgcGGUGGUCCu -3'
miRNA:   3'- gaaCUUagCGGCUUCGc---CCACCAGGc -5'
21488 3' -55 NC_004812.1 + 93985 0.68 0.890516
Target:  5'- -aUGAcggUGCCGGAGgGGGUGauggcGUCCa -3'
miRNA:   3'- gaACUua-GCGGCUUCgCCCAC-----CAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.