miRNA display CGI


Results 61 - 80 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 5' -61.6 NC_004812.1 + 119554 0.66 0.648977
Target:  5'- cCACGGCGGgauCCUGCUCauggccucccagCACCugGACCAg -3'
miRNA:   3'- -GUGCCGUCgc-GGACGAG------------GUGG--CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 17478 0.66 0.629169
Target:  5'- cCGCGGCGGaUGCCgcgguggcGCUCCcggacgucGCCGACg- -3'
miRNA:   3'- -GUGCCGUC-GCGGa-------CGAGG--------UGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 108772 0.66 0.658867
Target:  5'- gCGCGGgGGCGCCUaCgaCCugCaGGCCAu -3'
miRNA:   3'- -GUGCCgUCGCGGAcGa-GGugG-CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 86216 0.66 0.678577
Target:  5'- cCGCGGCAGCGaCCUccGUUCggCGCCuuGGCCc -3'
miRNA:   3'- -GUGCCGUCGC-GGA--CGAG--GUGG--CUGGu -5'
21488 5' -61.6 NC_004812.1 + 87868 0.66 0.629169
Target:  5'- gACGGCGuucGCGUCUGC-CCGCgGuCCu -3'
miRNA:   3'- gUGCCGU---CGCGGACGaGGUGgCuGGu -5'
21488 5' -61.6 NC_004812.1 + 84666 0.66 0.629169
Target:  5'- uCGCGGCAGgGCC-GCcCCgcGCCGuCCu -3'
miRNA:   3'- -GUGCCGUCgCGGaCGaGG--UGGCuGGu -5'
21488 5' -61.6 NC_004812.1 + 16703 0.66 0.678577
Target:  5'- gGCGGguGCGCgaGCgaCCGCgGgGCCGg -3'
miRNA:   3'- gUGCCguCGCGgaCGa-GGUGgC-UGGU- -5'
21488 5' -61.6 NC_004812.1 + 105831 0.66 0.658867
Target:  5'- gGCGGCGGCGCggGgUUCAucUCGGCCu -3'
miRNA:   3'- gUGCCGUCGCGgaCgAGGU--GGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 74078 0.66 0.639076
Target:  5'- cCACgGGCGGCGCCUcccgggGCcUCGCgGGCCc -3'
miRNA:   3'- -GUG-CCGUCGCGGA------CGaGGUGgCUGGu -5'
21488 5' -61.6 NC_004812.1 + 27164 0.66 0.639076
Target:  5'- gGCGGCcgcgcGCGCCgUGCcgCCGCCGcgcgGCCc -3'
miRNA:   3'- gUGCCGu----CGCGG-ACGa-GGUGGC----UGGu -5'
21488 5' -61.6 NC_004812.1 + 117645 0.66 0.668736
Target:  5'- gCGCGGCGGgGUC-GCgg-GCCGGCCGg -3'
miRNA:   3'- -GUGCCGUCgCGGaCGaggUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 66379 0.66 0.658867
Target:  5'- gGCGGgGGCGCCaaacagagGCUUCAUCuugaugagGACCAg -3'
miRNA:   3'- gUGCCgUCGCGGa-------CGAGGUGG--------CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 91706 0.66 0.678577
Target:  5'- aCACGGCGGCcUCUGUgcaAUCGACCc -3'
miRNA:   3'- -GUGCCGUCGcGGACGaggUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 77261 0.66 0.658867
Target:  5'- uCGCGGgGGCGCCgcugGCgCUGCCcGCCc -3'
miRNA:   3'- -GUGCCgUCGCGGa---CGaGGUGGcUGGu -5'
21488 5' -61.6 NC_004812.1 + 55658 0.66 0.668736
Target:  5'- cCGCGGCGGCGC--GCcCCGCCacgucGGCCc -3'
miRNA:   3'- -GUGCCGUCGCGgaCGaGGUGG-----CUGGu -5'
21488 5' -61.6 NC_004812.1 + 141585 0.66 0.648977
Target:  5'- aGCGGCGGCGUUgagcaGCgcgCCGaaGACCGc -3'
miRNA:   3'- gUGCCGUCGCGGa----CGa--GGUggCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 151915 0.66 0.66775
Target:  5'- gCGCGGCGG-GCCgggggcGCUCCccucggcGCCGGCg- -3'
miRNA:   3'- -GUGCCGUCgCGGa-----CGAGG-------UGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 1790 0.66 0.678577
Target:  5'- gACGGgAGCGCgUGCaucgggCC-CCGGCUg -3'
miRNA:   3'- gUGCCgUCGCGgACGa-----GGuGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 133595 0.66 0.668736
Target:  5'- gGCGGUAGCGCgCcGUugUCgCGCCGACg- -3'
miRNA:   3'- gUGCCGUCGCG-GaCG--AG-GUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 80171 0.66 0.665778
Target:  5'- uCGCGGaCAGCGCCgcggGCUacgucaaggcgaccCgGCUGGCCc -3'
miRNA:   3'- -GUGCC-GUCGCGGa---CGA--------------GgUGGCUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.