miRNA display CGI


Results 81 - 100 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 5' -61.6 NC_004812.1 + 79672 0.66 0.629169
Target:  5'- gGgGGUgcuGCGCCcGCUCC-CCGACUu -3'
miRNA:   3'- gUgCCGu--CGCGGaCGAGGuGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 57686 0.66 0.678577
Target:  5'- cCGCGGUcgAGCGCCaggagcGCUUCuGCCGcGCCAc -3'
miRNA:   3'- -GUGCCG--UCGCGGa-----CGAGG-UGGC-UGGU- -5'
21488 5' -61.6 NC_004812.1 + 50045 0.66 0.668736
Target:  5'- -cCGGCccgGGCGCCUccucccucaGCUCC-CCGGCg- -3'
miRNA:   3'- guGCCG---UCGCGGA---------CGAGGuGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 110297 0.66 0.658867
Target:  5'- gGCGGCGGCuGUC-GC-CCGCgCGGCCc -3'
miRNA:   3'- gUGCCGUCG-CGGaCGaGGUG-GCUGGu -5'
21488 5' -61.6 NC_004812.1 + 26163 0.66 0.678577
Target:  5'- -cCGGCcgcccuccAGCGCC-GcCUCCGCgGGCCGc -3'
miRNA:   3'- guGCCG--------UCGCGGaC-GAGGUGgCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 131774 0.66 0.636104
Target:  5'- cCGCGGCGcGUGCC-GCgaUCCGggggucgauccugcCCGACCAg -3'
miRNA:   3'- -GUGCCGU-CGCGGaCG--AGGU--------------GGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 34890 0.66 0.629169
Target:  5'- -cCGGCccgGGCaCCUGCUCuCGCCG-CCGc -3'
miRNA:   3'- guGCCG---UCGcGGACGAG-GUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 123027 0.66 0.648977
Target:  5'- gGCGGUAGaGCaggaagcGCUCC-CCGGCCGg -3'
miRNA:   3'- gUGCCGUCgCGga-----CGAGGuGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 47661 0.66 0.652935
Target:  5'- gGCGGCGauGCGCC-GCUCCAcguagagggggaaacCCGcgGCCGc -3'
miRNA:   3'- gUGCCGU--CGCGGaCGAGGU---------------GGC--UGGU- -5'
21488 5' -61.6 NC_004812.1 + 83475 0.66 0.648977
Target:  5'- cCGCGGCGgcGCGCCggaucccgcgGC-CCGCgUGACCGu -3'
miRNA:   3'- -GUGCCGU--CGCGGa---------CGaGGUG-GCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 119554 0.66 0.648977
Target:  5'- cCACGGCGGgauCCUGCUCauggccucccagCACCugGACCAg -3'
miRNA:   3'- -GUGCCGUCgc-GGACGAG------------GUGG--CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 118858 0.67 0.599488
Target:  5'- -cCGGCGG-GCC-GCcUCGCCGACCGc -3'
miRNA:   3'- guGCCGUCgCGGaCGaGGUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 121829 0.67 0.609368
Target:  5'- gGCGGaggccgGGCGCUUGCgggCCGCggCGGCCGc -3'
miRNA:   3'- gUGCCg-----UCGCGGACGa--GGUG--GCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 153024 0.67 0.599488
Target:  5'- -cCGGC-GCGCCcGC-CCGCCGccGCCGc -3'
miRNA:   3'- guGCCGuCGCGGaCGaGGUGGC--UGGU- -5'
21488 5' -61.6 NC_004812.1 + 46875 0.67 0.589631
Target:  5'- gCACGuacucgaucucGUcGCGCCUGC-CCAgCCGGCCGc -3'
miRNA:   3'- -GUGC-----------CGuCGCGGACGaGGU-GGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 28547 0.67 0.619264
Target:  5'- aGCGGCccgaccucgGGCGCCgcgaUGUUCgGCCGGCa- -3'
miRNA:   3'- gUGCCG---------UCGCGG----ACGAGgUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 31991 0.67 0.619264
Target:  5'- cCGCGGCAGgucCGCCacggagGCggggCCgaACCGGCCGc -3'
miRNA:   3'- -GUGCCGUC---GCGGa-----CGa---GG--UGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 153660 0.67 0.589631
Target:  5'- gGCGcGCAGgGCgUGCUCCugCucuCCAc -3'
miRNA:   3'- gUGC-CGUCgCGgACGAGGugGcu-GGU- -5'
21488 5' -61.6 NC_004812.1 + 75773 0.67 0.579803
Target:  5'- gGCGGCGGCGCCgaa--CGCgGGCCc -3'
miRNA:   3'- gUGCCGUCGCGGacgagGUGgCUGGu -5'
21488 5' -61.6 NC_004812.1 + 129760 0.67 0.619264
Target:  5'- gGCGGCGGCGCCcGC-CgCGgCGGCg- -3'
miRNA:   3'- gUGCCGUCGCGGaCGaG-GUgGCUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.