miRNA display CGI


Results 41 - 60 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 5' -61.6 NC_004812.1 + 150696 0.73 0.267719
Target:  5'- --gGGCGGCGUCgcggcgGCUCCGCCcGCCGg -3'
miRNA:   3'- gugCCGUCGCGGa-----CGAGGUGGcUGGU- -5'
21488 5' -61.6 NC_004812.1 + 152806 0.73 0.293217
Target:  5'- -cCGGCGGCGCCgagGCcgccgucgCCGCCGugCGc -3'
miRNA:   3'- guGCCGUCGCGGa--CGa-------GGUGGCugGU- -5'
21488 5' -61.6 NC_004812.1 + 131525 0.73 0.297201
Target:  5'- gCGCGGCGGCGCCgccccgucgaggaGC-CCGCCG-CCGc -3'
miRNA:   3'- -GUGCCGUCGCGGa------------CGaGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 13001 0.73 0.286669
Target:  5'- gACgGGCGGCGCUUGCUCCGucggggcgacuCCGGCgGg -3'
miRNA:   3'- gUG-CCGUCGCGGACGAGGU-----------GGCUGgU- -5'
21488 5' -61.6 NC_004812.1 + 6016 0.73 0.297201
Target:  5'- gCGCGGCGGCGCCgccccgucgaggaGC-CCGCCG-CCGc -3'
miRNA:   3'- -GUGCCGUCGCGGa------------CGaGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 27298 0.73 0.293217
Target:  5'- -cCGGCGGCGCCgagGCcgccgucgCCGCCGugCGc -3'
miRNA:   3'- guGCCGUCGCGGa--CGa-------GGUGGCugGU- -5'
21488 5' -61.6 NC_004812.1 + 63055 0.73 0.293217
Target:  5'- gGCGGgGGCGUCUgGCUCCGCCcccacGGCCc -3'
miRNA:   3'- gUGCCgUCGCGGA-CGAGGUGG-----CUGGu -5'
21488 5' -61.6 NC_004812.1 + 111337 0.73 0.293217
Target:  5'- cCGCGGCGGCGCCgaccCCGCgGGCCc -3'
miRNA:   3'- -GUGCCGUCGCGGacgaGGUGgCUGGu -5'
21488 5' -61.6 NC_004812.1 + 133909 0.73 0.29988
Target:  5'- uCGCGGCGGgGCCU-CUacUCGCCGGCCu -3'
miRNA:   3'- -GUGCCGUCgCGGAcGA--GGUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 54770 0.72 0.313557
Target:  5'- aCACGGCGGCGCUcGUg--GCCGACCu -3'
miRNA:   3'- -GUGCCGUCGCGGaCGaggUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 81670 0.72 0.313557
Target:  5'- cCGCGGC-GCGCgacgGCUCCcCCGACCc -3'
miRNA:   3'- -GUGCCGuCGCGga--CGAGGuGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 26201 0.72 0.313557
Target:  5'- aGCGGCGGCGCgC-GCgcgCCGCCGugGCCGg -3'
miRNA:   3'- gUGCCGUCGCG-GaCGa--GGUGGC--UGGU- -5'
21488 5' -61.6 NC_004812.1 + 72749 0.72 0.320571
Target:  5'- gGCGGCAGCGCCgccccccgccGCUCCccccggagaCGGCCGg -3'
miRNA:   3'- gUGCCGUCGCGGa---------CGAGGug-------GCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 146613 0.72 0.334949
Target:  5'- gGCGGCAGCaCCUcCUCCACgCGACa- -3'
miRNA:   3'- gUGCCGUCGcGGAcGAGGUG-GCUGgu -5'
21488 5' -61.6 NC_004812.1 + 55284 0.72 0.342313
Target:  5'- uGCGGCgAGCGCCUGCa-CGCCGAg-- -3'
miRNA:   3'- gUGCCG-UCGCGGACGagGUGGCUggu -5'
21488 5' -61.6 NC_004812.1 + 15998 0.72 0.30666
Target:  5'- cCGCGGCcccGCGCCagcagcaGCUCCGCCaGGCCu -3'
miRNA:   3'- -GUGCCGu--CGCGGa------CGAGGUGG-CUGGu -5'
21488 5' -61.6 NC_004812.1 + 95605 0.72 0.332763
Target:  5'- gCGCGGCAGCagcaacggcaccggGCCggGCUCCACCu-CCGc -3'
miRNA:   3'- -GUGCCGUCG--------------CGGa-CGAGGUGGcuGGU- -5'
21488 5' -61.6 NC_004812.1 + 152363 0.72 0.30666
Target:  5'- cCGCGGCgGGCGCCgccGCcgCCGCCGccGCCGc -3'
miRNA:   3'- -GUGCCG-UCGCGGa--CGa-GGUGGC--UGGU- -5'
21488 5' -61.6 NC_004812.1 + 151709 0.72 0.313557
Target:  5'- aGCGGCGGCGCgC-GCgcgCCGCCGugGCCGg -3'
miRNA:   3'- gUGCCGUCGCG-GaCGa--GGUGGC--UGGU- -5'
21488 5' -61.6 NC_004812.1 + 26855 0.72 0.30666
Target:  5'- cCGCGGCgGGCGCCgccGCcgCCGCCGccGCCGc -3'
miRNA:   3'- -GUGCCG-UCGCGGa--CGa-GGUGGC--UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.