Results 61 - 80 of 420 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21488 | 5' | -61.6 | NC_004812.1 | + | 26201 | 0.72 | 0.313557 |
Target: 5'- aGCGGCGGCGCgC-GCgcgCCGCCGugGCCGg -3' miRNA: 3'- gUGCCGUCGCG-GaCGa--GGUGGC--UGGU- -5' |
|||||||
21488 | 5' | -61.6 | NC_004812.1 | + | 153180 | 0.71 | 0.357388 |
Target: 5'- gGCGGCuGGCGCC-GCgugCCGCCGGggcCCAg -3' miRNA: 3'- gUGCCG-UCGCGGaCGa--GGUGGCU---GGU- -5' |
|||||||
21488 | 5' | -61.6 | NC_004812.1 | + | 140652 | 0.71 | 0.380062 |
Target: 5'- gCGCGGCGGCGCCaacGCgCCGCCuacgucuacgcguGACCc -3' miRNA: 3'- -GUGCCGUCGCGGa--CGaGGUGG-------------CUGGu -5' |
|||||||
21488 | 5' | -61.6 | NC_004812.1 | + | 21440 | 0.71 | 0.359689 |
Target: 5'- aGCGGCGGCagaggaggccgguGaCCUGCgagaacugggcgggCCACCGACCGc -3' miRNA: 3'- gUGCCGUCG-------------C-GGACGa-------------GGUGGCUGGU- -5' |
|||||||
21488 | 5' | -61.6 | NC_004812.1 | + | 122287 | 0.71 | 0.349793 |
Target: 5'- gCGCGGCGGCGCCgGagggCCGCCGGg-- -3' miRNA: 3'- -GUGCCGUCGCGGaCga--GGUGGCUggu -5' |
|||||||
21488 | 5' | -61.6 | NC_004812.1 | + | 100364 | 0.71 | 0.35586 |
Target: 5'- cCACGGUuccGGCGCCcgccgccgggggGCgcgaggCCACCGGCCGg -3' miRNA: 3'- -GUGCCG---UCGCGGa-----------CGa-----GGUGGCUGGU- -5' |
|||||||
21488 | 5' | -61.6 | NC_004812.1 | + | 12520 | 0.71 | 0.357388 |
Target: 5'- gUACGGCAGCGgggacuCCUccagcaGCUCCGCCaGGCCc -3' miRNA: 3'- -GUGCCGUCGC------GGA------CGAGGUGG-CUGGu -5' |
|||||||
21488 | 5' | -61.6 | NC_004812.1 | + | 63959 | 0.71 | 0.372923 |
Target: 5'- cCGCGuGUAcacGUGCCUGCUgcgccUCGCCGGCCAg -3' miRNA: 3'- -GUGC-CGU---CGCGGACGA-----GGUGGCUGGU- -5' |
|||||||
21488 | 5' | -61.6 | NC_004812.1 | + | 110514 | 0.71 | 0.368215 |
Target: 5'- gGCGuGCgGGCGCCUGCUgCCggucuucguggucccGCCGGCCu -3' miRNA: 3'- gUGC-CG-UCGCGGACGA-GG---------------UGGCUGGu -5' |
|||||||
21488 | 5' | -61.6 | NC_004812.1 | + | 130407 | 0.71 | 0.388911 |
Target: 5'- cCACGGCGgcgcgcgcGCGCCgccGCUCgCugCGGCCc -3' miRNA: 3'- -GUGCCGU--------CGCGGa--CGAG-GugGCUGGu -5' |
|||||||
21488 | 5' | -61.6 | NC_004812.1 | + | 79461 | 0.71 | 0.388911 |
Target: 5'- gCGCGGCGGCgggggcccGCCcgGcCUCCucACCGACCGc -3' miRNA: 3'- -GUGCCGUCG--------CGGa-C-GAGG--UGGCUGGU- -5' |
|||||||
21488 | 5' | -61.6 | NC_004812.1 | + | 104837 | 0.71 | 0.349793 |
Target: 5'- cCGCGGCGGCgGUCUgGCUCUugGCCGcGCCGg -3' miRNA: 3'- -GUGCCGUCG-CGGA-CGAGG--UGGC-UGGU- -5' |
|||||||
21488 | 5' | -61.6 | NC_004812.1 | + | 27672 | 0.71 | 0.357388 |
Target: 5'- gGCGGCuGGCGCC-GCgugCCGCCGGggcCCAg -3' miRNA: 3'- gUGCCG-UCGCGGaCGa--GGUGGCU---GGU- -5' |
|||||||
21488 | 5' | -61.6 | NC_004812.1 | + | 79445 | 0.71 | 0.365099 |
Target: 5'- gACGGCGcCGCCgcggGCgggCUGCCGGCCGa -3' miRNA: 3'- gUGCCGUcGCGGa---CGa--GGUGGCUGGU- -5' |
|||||||
21488 | 5' | -61.6 | NC_004812.1 | + | 87733 | 0.71 | 0.365099 |
Target: 5'- gGCGGCgcgGGCGCCgGggCCGCgGACCGa -3' miRNA: 3'- gUGCCG---UCGCGGaCgaGGUGgCUGGU- -5' |
|||||||
21488 | 5' | -61.6 | NC_004812.1 | + | 153188 | 0.71 | 0.349793 |
Target: 5'- gCGCGGCGGCGCCgGagggCCGCCGGg-- -3' miRNA: 3'- -GUGCCGUCGCGGaCga--GGUGGCUggu -5' |
|||||||
21488 | 5' | -61.6 | NC_004812.1 | + | 19906 | 0.71 | 0.357388 |
Target: 5'- aCGCGGCGgcccGCGCC-GCcgCCACCGcGCCGg -3' miRNA: 3'- -GUGCCGU----CGCGGaCGa-GGUGGC-UGGU- -5' |
|||||||
21488 | 5' | -61.6 | NC_004812.1 | + | 43532 | 0.71 | 0.357388 |
Target: 5'- cCGCGGCGGUGUCgcgGCUcgcugCCGCCGcgGCCGa -3' miRNA: 3'- -GUGCCGUCGCGGa--CGA-----GGUGGC--UGGU- -5' |
|||||||
21488 | 5' | -61.6 | NC_004812.1 | + | 8562 | 0.71 | 0.357388 |
Target: 5'- aAgGGCccuGCGCCUGCagagCC-CCGACCGg -3' miRNA: 3'- gUgCCGu--CGCGGACGa---GGuGGCUGGU- -5' |
|||||||
21488 | 5' | -61.6 | NC_004812.1 | + | 136104 | 0.71 | 0.349793 |
Target: 5'- gACGGgGGUGCCcagggGCUCUGCCG-CCAg -3' miRNA: 3'- gUGCCgUCGCGGa----CGAGGUGGCuGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home