miRNA display CGI


Results 81 - 100 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 5' -61.6 NC_004812.1 + 79445 0.71 0.365099
Target:  5'- gACGGCGcCGCCgcggGCgggCUGCCGGCCGa -3'
miRNA:   3'- gUGCCGUcGCGGa---CGa--GGUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 87733 0.71 0.365099
Target:  5'- gGCGGCgcgGGCGCCgGggCCGCgGACCGa -3'
miRNA:   3'- gUGCCG---UCGCGGaCgaGGUGgCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 30827 0.7 0.412876
Target:  5'- gCAgGGCGGCGCCagGCgCCGCCcgggggcgcgcccGGCCAu -3'
miRNA:   3'- -GUgCCGUCGCGGa-CGaGGUGG-------------CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 129304 0.7 0.412876
Target:  5'- gCACGGCGGCgacggcgGCCUcgGCgCCGCCGGCg- -3'
miRNA:   3'- -GUGCCGUCG-------CGGA--CGaGGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 94697 0.7 0.405341
Target:  5'- gCGCGGCGGCGCgUGCggC-CCGAgCAc -3'
miRNA:   3'- -GUGCCGUCGCGgACGagGuGGCUgGU- -5'
21488 5' -61.6 NC_004812.1 + 33461 0.7 0.405341
Target:  5'- cCAUGGaCGGCGcCCUGCggcggaCgGCCGACCu -3'
miRNA:   3'- -GUGCC-GUCGC-GGACGa-----GgUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 16205 0.7 0.397072
Target:  5'- gCGCGGCGgacccgggccgcGCGCCggagGCggagCCGgCCGGCCAg -3'
miRNA:   3'- -GUGCCGU------------CGCGGa---CGa---GGU-GGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 130655 0.7 0.422202
Target:  5'- gACGGCGGCGUCgGC-CCGCgGuCCGg -3'
miRNA:   3'- gUGCCGUCGCGGaCGaGGUGgCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 43577 0.7 0.413719
Target:  5'- --aGGgGGCGCCUGaCgucaaCGCCGGCCAg -3'
miRNA:   3'- gugCCgUCGCGGAC-Gag---GUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 98313 0.7 0.413719
Target:  5'- -cCGGCGGCGCgCgggugcugGCUCgcguaCGCCGACCGg -3'
miRNA:   3'- guGCCGUCGCG-Ga-------CGAG-----GUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 129221 0.7 0.421349
Target:  5'- gGCGGCGGCGCCgGCggagCgCACCuggcgcgGGCCGc -3'
miRNA:   3'- gUGCCGUCGCGGaCGa---G-GUGG-------CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 19404 0.7 0.439478
Target:  5'- aCGCGcGCGGUcacgGCCUGCgcguggCCGCgCGGCCGc -3'
miRNA:   3'- -GUGC-CGUCG----CGGACGa-----GGUG-GCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 151760 0.7 0.439478
Target:  5'- uCACGGCcGCGCCg---CCGCgGGCCGu -3'
miRNA:   3'- -GUGCCGuCGCGGacgaGGUGgCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 106086 0.7 0.439478
Target:  5'- uCGCGGCcuGCGCCUcCUCUGuCCGACUg -3'
miRNA:   3'- -GUGCCGu-CGCGGAcGAGGU-GGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 97465 0.7 0.439478
Target:  5'- -uCGGaCGGCGCCaGCggCAUCGACCAg -3'
miRNA:   3'- guGCC-GUCGCGGaCGagGUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 15015 0.7 0.430789
Target:  5'- cCGCGGUcuucGGCGCgCUGCUCaaCGCCG-CCGc -3'
miRNA:   3'- -GUGCCG----UCGCG-GACGAG--GUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 67380 0.7 0.422202
Target:  5'- -gUGGCGGCGCggGcCUCCGCCG-CCGc -3'
miRNA:   3'- guGCCGUCGCGgaC-GAGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 22372 0.7 0.412035
Target:  5'- aCGCGGCaaagcgcgccgccAGCGUCUGgguaaaaCUCCGCCGACa- -3'
miRNA:   3'- -GUGCCG-------------UCGCGGAC-------GAGGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 20161 0.7 0.422202
Target:  5'- gCGCGGauuCGCCUGCggugCCGCCgGGCCGc -3'
miRNA:   3'- -GUGCCgucGCGGACGa---GGUGG-CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 74984 0.7 0.422202
Target:  5'- gACGcGCcGCGCgUGCUCCAgccagUCGACCGc -3'
miRNA:   3'- gUGC-CGuCGCGgACGAGGU-----GGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.