miRNA display CGI


Results 101 - 120 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 5' -61.6 NC_004812.1 + 3796 0.7 0.412876
Target:  5'- gCACGGCGGCgacggcgGCCUcgGCgCCGCCGGCg- -3'
miRNA:   3'- -GUGCCGUCG-------CGGA--CGaGGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 129221 0.7 0.421349
Target:  5'- gGCGGCGGCGCCgGCggagCgCACCuggcgcgGGCCGc -3'
miRNA:   3'- gUGCCGUCGCGGaCGa---G-GUGG-------CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 20161 0.7 0.422202
Target:  5'- gCGCGGauuCGCCUGCggugCCGCCgGGCCGc -3'
miRNA:   3'- -GUGCCgucGCGGACGa---GGUGG-CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 74984 0.7 0.422202
Target:  5'- gACGcGCcGCGCgUGCUCCAgccagUCGACCGc -3'
miRNA:   3'- gUGC-CGuCGCGgACGAGGU-----GGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 130655 0.7 0.422202
Target:  5'- gACGGCGGCGUCgGC-CCGCgGuCCGg -3'
miRNA:   3'- gUGCCGUCGCGGaCGaGGUGgCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 151760 0.7 0.439478
Target:  5'- uCACGGCcGCGCCg---CCGCgGGCCGu -3'
miRNA:   3'- -GUGCCGuCGCGGacgaGGUGgCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 15015 0.7 0.430789
Target:  5'- cCGCGGUcuucGGCGCgCUGCUCaaCGCCG-CCGc -3'
miRNA:   3'- -GUGCCG----UCGCG-GACGAG--GUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 97465 0.7 0.439478
Target:  5'- -uCGGaCGGCGCCaGCggCAUCGACCAg -3'
miRNA:   3'- guGCC-GUCGCGGaCGagGUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 98313 0.7 0.413719
Target:  5'- -cCGGCGGCGCgCgggugcugGCUCgcguaCGCCGACCGg -3'
miRNA:   3'- guGCCGUCGCG-Ga-------CGAG-----GUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 19404 0.7 0.439478
Target:  5'- aCGCGcGCGGUcacgGCCUGCgcguggCCGCgCGGCCGc -3'
miRNA:   3'- -GUGC-CGUCG----CGGACGa-----GGUG-GCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 144958 0.7 0.397071
Target:  5'- --aGGCcgaGGCGCC-GCUCC-CCGACCc -3'
miRNA:   3'- gugCCG---UCGCGGaCGAGGuGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 128698 0.7 0.397071
Target:  5'- gGCGG-GGCGCCcgGuCUCC-CCGACCGg -3'
miRNA:   3'- gUGCCgUCGCGGa-C-GAGGuGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 26252 0.7 0.439478
Target:  5'- uCACGGCcGCGCCg---CCGCgGGCCGu -3'
miRNA:   3'- -GUGCCGuCGCGGacgaGGUGgCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 73227 0.7 0.413719
Target:  5'- --aGGCGGCcgGCCUGCggaCCGCCG-CCGc -3'
miRNA:   3'- gugCCGUCG--CGGACGa--GGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 50095 0.7 0.439478
Target:  5'- cCGCGGCcgccGGCGCCccGCgCCGCgGACCc -3'
miRNA:   3'- -GUGCCG----UCGCGGa-CGaGGUGgCUGGu -5'
21488 5' -61.6 NC_004812.1 + 124195 0.7 0.439478
Target:  5'- gCGCGGCcGCGCCcGCggCGgCGACCGa -3'
miRNA:   3'- -GUGCCGuCGCGGaCGagGUgGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 106086 0.7 0.439478
Target:  5'- uCGCGGCcuGCGCCUcCUCUGuCCGACUg -3'
miRNA:   3'- -GUGCCGu-CGCGGAcGAGGU-GGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 3876 0.69 0.448266
Target:  5'- cCGCGGCccgcaAGCGCCcgGcCUCCGCCuccgaGGCCGc -3'
miRNA:   3'- -GUGCCG-----UCGCGGa-C-GAGGUGG-----CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 119495 0.69 0.45715
Target:  5'- gGCGGCAGgGgCgGCgUCCGCgGGCCGc -3'
miRNA:   3'- gUGCCGUCgCgGaCG-AGGUGgCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 91521 0.69 0.451808
Target:  5'- gGCGGcCGGgGCCUGCggacgcgagcccgcgUCCGCCGAgUAc -3'
miRNA:   3'- gUGCC-GUCgCGGACG---------------AGGUGGCUgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.