miRNA display CGI


Results 61 - 80 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 5' -61.6 NC_004812.1 + 115150 0.66 0.648977
Target:  5'- gAgGGCGGC-CCUGCggCACCGAUa- -3'
miRNA:   3'- gUgCCGUCGcGGACGagGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 115486 0.66 0.648977
Target:  5'- uGCGGCcGCGCCggGCggCgGCCcGGCCu -3'
miRNA:   3'- gUGCCGuCGCGGa-CGa-GgUGG-CUGGu -5'
21488 5' -61.6 NC_004812.1 + 96826 0.66 0.648977
Target:  5'- gAgGGUgagGGCGCC-GCccCCACCGGCCc -3'
miRNA:   3'- gUgCCG---UCGCGGaCGa-GGUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 106512 0.66 0.648977
Target:  5'- cCGCGGCgcggGGCGCCgGCggCCGCgGcGCCu -3'
miRNA:   3'- -GUGCCG----UCGCGGaCGa-GGUGgC-UGGu -5'
21488 5' -61.6 NC_004812.1 + 123027 0.66 0.648977
Target:  5'- gGCGGUAGaGCaggaagcGCUCC-CCGGCCGg -3'
miRNA:   3'- gUGCCGUCgCGga-----CGAGGuGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 41165 0.66 0.648977
Target:  5'- aGCGGC-GCGCCgccaggcGCUCUcggcGCCGcGCCGg -3'
miRNA:   3'- gUGCCGuCGCGGa------CGAGG----UGGC-UGGU- -5'
21488 5' -61.6 NC_004812.1 + 83475 0.66 0.648977
Target:  5'- cCGCGGCGgcGCGCCggaucccgcgGC-CCGCgUGACCGu -3'
miRNA:   3'- -GUGCCGU--CGCGGa---------CGaGGUG-GCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 141585 0.66 0.648977
Target:  5'- aGCGGCGGCGUUgagcaGCgcgCCGaaGACCGc -3'
miRNA:   3'- gUGCCGUCGCGGa----CGa--GGUggCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 109704 0.66 0.648977
Target:  5'- cCGCGGCGGCgGCC-GC-CgCGCCcGACCc -3'
miRNA:   3'- -GUGCCGUCG-CGGaCGaG-GUGG-CUGGu -5'
21488 5' -61.6 NC_004812.1 + 54650 0.66 0.648977
Target:  5'- cCACGGgGGuCGCCgccgcgggGC-CCAgCGGCCGg -3'
miRNA:   3'- -GUGCCgUC-GCGGa-------CGaGGUgGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 89959 0.66 0.643037
Target:  5'- gGCGGC-GCGCCUcccgacgcgccucccGCUUCGCCcguGCCGa -3'
miRNA:   3'- gUGCCGuCGCGGA---------------CGAGGUGGc--UGGU- -5'
21488 5' -61.6 NC_004812.1 + 19582 0.66 0.639076
Target:  5'- aCugGGguGUGuCCUGgaUCGCCG-CCAg -3'
miRNA:   3'- -GugCCguCGC-GGACgaGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 51188 0.66 0.639076
Target:  5'- gGCgGGCgcgGGCGCCggGCcCCGCCGAgCGc -3'
miRNA:   3'- gUG-CCG---UCGCGGa-CGaGGUGGCUgGU- -5'
21488 5' -61.6 NC_004812.1 + 121520 0.66 0.639076
Target:  5'- cCGCGGgGGCGCCcucgGCgUCCACgUGGCgGg -3'
miRNA:   3'- -GUGCCgUCGCGGa---CG-AGGUG-GCUGgU- -5'
21488 5' -61.6 NC_004812.1 + 27164 0.66 0.639076
Target:  5'- gGCGGCcgcgcGCGCCgUGCcgCCGCCGcgcgGCCc -3'
miRNA:   3'- gUGCCGu----CGCGG-ACGa-GGUGGC----UGGu -5'
21488 5' -61.6 NC_004812.1 + 74078 0.66 0.639076
Target:  5'- cCACgGGCGGCGCCUcccgggGCcUCGCgGGCCc -3'
miRNA:   3'- -GUG-CCGUCGCGGA------CGaGGUGgCUGGu -5'
21488 5' -61.6 NC_004812.1 + 152421 0.66 0.639076
Target:  5'- cCGCGGgGGCGCCcucgGCgUCCACgUGGCgGg -3'
miRNA:   3'- -GUGCCgUCGCGGa---CG-AGGUG-GCUGgU- -5'
21488 5' -61.6 NC_004812.1 + 77269 0.66 0.639076
Target:  5'- -uCGGCcaGGC-CCgaGCUCCGCCGcACCGu -3'
miRNA:   3'- guGCCG--UCGcGGa-CGAGGUGGC-UGGU- -5'
21488 5' -61.6 NC_004812.1 + 31833 0.66 0.638085
Target:  5'- cCGCGGgAccagcgagaccgaGCGCCgGCUCCACa-GCCAg -3'
miRNA:   3'- -GUGCCgU-------------CGCGGaCGAGGUGgcUGGU- -5'
21488 5' -61.6 NC_004812.1 + 131774 0.66 0.636104
Target:  5'- cCGCGGCGcGUGCC-GCgaUCCGggggucgauccugcCCGACCAg -3'
miRNA:   3'- -GUGCCGU-CGCGGaCG--AGGU--------------GGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.