miRNA display CGI


Results 41 - 60 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 5' -61.6 NC_004812.1 + 12828 0.68 0.560258
Target:  5'- cCGCGGUGGUcucuGgCUGCUCCACgGugUAg -3'
miRNA:   3'- -GUGCCGUCG----CgGACGAGGUGgCugGU- -5'
21488 5' -61.6 NC_004812.1 + 13001 0.73 0.286669
Target:  5'- gACgGGCGGCGCUUGCUCCGucggggcgacuCCGGCgGg -3'
miRNA:   3'- gUG-CCGUCGCGGACGAGGU-----------GGCUGgU- -5'
21488 5' -61.6 NC_004812.1 + 13295 0.7 0.439478
Target:  5'- gCGCGGCggGGCGUCcGCgucUCCGCCGcGCCGg -3'
miRNA:   3'- -GUGCCG--UCGCGGaCG---AGGUGGC-UGGU- -5'
21488 5' -61.6 NC_004812.1 + 14279 0.68 0.503845
Target:  5'- gCACGGCGGuCGCCgaaucaguagggcgcGCcCCGCCGcGCCGg -3'
miRNA:   3'- -GUGCCGUC-GCGGa--------------CGaGGUGGC-UGGU- -5'
21488 5' -61.6 NC_004812.1 + 15015 0.7 0.430789
Target:  5'- cCGCGGUcuucGGCGCgCUGCUCaaCGCCG-CCGc -3'
miRNA:   3'- -GUGCCG----UCGCG-GACGAG--GUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 15124 0.66 0.625206
Target:  5'- gUACGGCGGCGCCcccgacgGCgacgucgcagccgUCGCCGAgCGa -3'
miRNA:   3'- -GUGCCGUCGCGGa------CGa------------GGUGGCUgGU- -5'
21488 5' -61.6 NC_004812.1 + 15998 0.72 0.30666
Target:  5'- cCGCGGCcccGCGCCagcagcaGCUCCGCCaGGCCu -3'
miRNA:   3'- -GUGCCGu--CGCGGa------CGAGGUGG-CUGGu -5'
21488 5' -61.6 NC_004812.1 + 16205 0.7 0.397072
Target:  5'- gCGCGGCGgacccgggccgcGCGCCggagGCggagCCGgCCGGCCAg -3'
miRNA:   3'- -GUGCCGU------------CGCGGa---CGa---GGU-GGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 16597 0.67 0.599488
Target:  5'- gGCGGCAGgGCC-GCagCACCauaacggugauGACCAc -3'
miRNA:   3'- gUGCCGUCgCGGaCGagGUGG-----------CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 16703 0.66 0.678577
Target:  5'- gGCGGguGCGCgaGCgaCCGCgGgGCCGg -3'
miRNA:   3'- gUGCCguCGCGgaCGa-GGUGgC-UGGU- -5'
21488 5' -61.6 NC_004812.1 + 17478 0.66 0.629169
Target:  5'- cCGCGGCGGaUGCCgcgguggcGCUCCcggacgucGCCGACg- -3'
miRNA:   3'- -GUGCCGUC-GCGGa-------CGAGG--------UGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 18365 0.73 0.267719
Target:  5'- -cCGGCGGCGCCggGC-CCGCgGGCCc -3'
miRNA:   3'- guGCCGUCGCGGa-CGaGGUGgCUGGu -5'
21488 5' -61.6 NC_004812.1 + 18557 0.76 0.183322
Target:  5'- gCGCGGCGcGgGCCcGCUCCGCCGccGCCGc -3'
miRNA:   3'- -GUGCCGU-CgCGGaCGAGGUGGC--UGGU- -5'
21488 5' -61.6 NC_004812.1 + 18704 0.66 0.678577
Target:  5'- aGCGGCAGcCGCaguaGCUCCGCgGcGCUg -3'
miRNA:   3'- gUGCCGUC-GCGga--CGAGGUGgC-UGGu -5'
21488 5' -61.6 NC_004812.1 + 18792 0.68 0.512304
Target:  5'- cCGgGGCcagGGgGCCUGCUCCGCgGcGCCc -3'
miRNA:   3'- -GUgCCG---UCgCGGACGAGGUGgC-UGGu -5'
21488 5' -61.6 NC_004812.1 + 19404 0.7 0.439478
Target:  5'- aCGCGcGCGGUcacgGCCUGCgcguggCCGCgCGGCCGc -3'
miRNA:   3'- -GUGC-CGUCG----CGGACGa-----GGUG-GCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 19582 0.66 0.639076
Target:  5'- aCugGGguGUGuCCUGgaUCGCCG-CCAg -3'
miRNA:   3'- -GugCCguCGC-GGACgaGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 19699 0.75 0.201918
Target:  5'- gCGCGGCGGCGCgCgGCgCCGgCGACCGg -3'
miRNA:   3'- -GUGCCGUCGCG-GaCGaGGUgGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 19906 0.71 0.357388
Target:  5'- aCGCGGCGgcccGCGCC-GCcgCCACCGcGCCGg -3'
miRNA:   3'- -GUGCCGU----CGCGGaCGa-GGUGGC-UGGU- -5'
21488 5' -61.6 NC_004812.1 + 20161 0.7 0.422202
Target:  5'- gCGCGGauuCGCCUGCggugCCGCCgGGCCGc -3'
miRNA:   3'- -GUGCCgucGCGGACGa---GGUGG-CUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.